Sami C. Al-Izzi

ORCID: 0000-0003-4764-1457
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About
Contact & Profiles
Research Areas
  • Micro and Nano Robotics
  • Lipid Membrane Structure and Behavior
  • Advanced Materials and Mechanics
  • Cellular Mechanics and Interactions
  • Advanced Thermodynamics and Statistical Mechanics
  • Cellular transport and secretion
  • 3D Printing in Biomedical Research
  • Liquid Crystal Research Advancements
  • HIV Research and Treatment
  • Membrane-based Ion Separation Techniques
  • Nuclear Structure and Function
  • Erythrocyte Function and Pathophysiology
  • Advanced Theoretical and Applied Studies in Material Sciences and Geometry
  • Microfluidic and Bio-sensing Technologies
  • ATP Synthase and ATPases Research
  • Synthesis and Properties of Aromatic Compounds
  • Neuroscience and Neural Engineering
  • Membrane Separation Technologies
  • Nanopore and Nanochannel Transport Studies
  • RNA Research and Splicing
  • Mechanical and Optical Resonators
  • Protist diversity and phylogeny
  • Advanced Numerical Analysis Techniques
  • Microtubule and mitosis dynamics
  • Surfactants and Colloidal Systems

UNSW Sydney
2020-2025

EMBL Australia
2020-2024

University of Oslo
2023-2024

Inserm
2024

Institut Curie
2018-2020

Centre National de la Recherche Scientifique
2018-2020

University of Warwick
2018-2020

Université Paris Sciences et Lettres
2018-2020

Physique des Cellules et Cancers
2018-2020

Sorbonne Université
2018-2020

Abstract HIV can infect non-dividing cells because the viral capsid overcome selective barrier of nuclear pore complex and deliver genome directly into nucleus 1,2 . Remarkably, intact is more than 1,000 times larger size limit prescribed by diffusion 3 This in central channel composed intrinsically disordered nucleoporin domains enriched phenylalanine–glycine (FG) dipeptides. Through multivalent FG interactions, cellular karyopherins their bound cargoes solubilize this phase to drive...

10.1038/s41586-023-06969-7 article EN cc-by Nature 2024-01-24

Morphodynamic equations governing the behaviour of active nematic fluids on deformable curved surfaces are constructed in large deformation limit. Emphasis is placed formulation objective rates that account for normal deformations whilst ensuring tangential flows Eulerian, and use surface derivative (rather than covariant derivative) free energy, which elastically couples local order to out-of-plane bending surface. Focusing geometry its dynamical interplay with hydrodynamics, several...

10.1017/jfm.2023.18 article EN Journal of Fluid Mechanics 2023-02-10

We propose and analyze an active hydrodynamic theory that characterizes the effects of scaffold protein anillin. Anillin is found at major sites cortical activity, such as adherens junctions cytokinetic furrow, where canonical regulator actomyosin remodeling small GTPase, RhoA. RhoA acts via intermediary ``effectors'' to increase both rates activation myosin motors polymerization actin filaments. has been shown this action RhoA---improving critical in signaling pathway without altering...

10.1103/physreve.111.024403 article EN Physical review. E 2025-02-05

The cytoskeletal component actomyosin is a canonical example of active matter since the power-stroke cycle locally converts chemical energy in form adenoside triphosphate (ATP) into mechanical work for remodeling. Observing myosin II minifilaments as they remodel actin , we now report that at high concentrations ATP, metastable swirling patterns are characterized by recurrent vortex and spiral-like motifs, whereas low such structures give way to asterlike patterns. To explain this, construct...

10.1103/physrevresearch.7.013175 article EN cc-by Physical Review Research 2025-02-18

Morphodynamic descriptions of fluid deformable surfaces are relevant for a range biological and soft matter phenomena, spanning materials that can be passive or active, as well ordered topological. However, principled, geometric formulation the correct hydrodynamic equations has remained opaque, with objective rates proving central, contentious issue. We argue this is due to conflation several important notions must disambiguated when describing surfaces. These Eulerian Lagrangian...

10.1017/jfm.2025.63 article EN Journal of Fluid Mechanics 2025-03-14

Living systems are chiral on multiple scales, from constituent biopolymers to large scale morphology, and their active mechanics is both driven by components serves generate morphologies. We describe the of fluid membranes in coordinate-free form, with focus contributions stress. These geometric ``odd elastic'' forces response mean curvature gradients but directed perpendicularly. As a result, they induce tangential membrane flows that circulate around maxima minima curvature. When normal...

10.1103/physrevresearch.5.043227 article EN cc-by Physical Review Research 2023-12-11

Motivated by the mechanics of dynamin-mediated membrane tube fission we analyse stability fluid tubes subjected to shear flow in azimuthal direction. We find a novel helical instability driven which results non-equilibrium steady state for fluctuations. This has its onset at rates that may be physiologically accessible under action dynamin and could also probed using in-vitro experiments on nanotubes, e.g. magnetic tweezers. discuss how such an play role mechanism fission.

10.1103/physrevlett.125.018101 article EN Physical Review Letters 2020-07-01

We study a membrane tube with unidirectional ion pumps driving an osmotic pressure difference. A pressure-driven peristaltic instability is identified, qualitatively distinct from similar tension-driven Rayleigh-type instabilities on tubes. discuss how this could be related to the function and biogenesis of bound organelles, in particular, contractile vacuole complex. The unusually long natural wavelength agreement that observed cells.

10.1103/physrevlett.120.138102 article EN cc-by Physical Review Letters 2018-03-30

Summary Paragraph HIV can infect non-dividing cells because the viral capsid overcome selective barrier of nuclear pore complex and deliver genome directly into nucleus. Remarkably, intact is over one thousand times greater than size-limit prescribed by pore’s diffusion barrier. This a phase-separated condensate in central channel comprised intrinsically-disordered nucleoporin domains enriched phenylalanine-glycine (FG) dipeptides. Through multivalent FG-interactions, cellular karyopherins...

10.1101/2023.03.23.534032 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-03-24

Membrane tubes are essential structural features in cells that facilitate biomaterial transport and inter- intracellular signaling. The shape of these can be regulated by the proteins surround adhere to them. We study stability a biomembrane tube coated with combining linear analysis, out-of-equilibrium hydrodynamic calculations, numerical solutions Helfrich-like membrane model. Our analysis demonstrates both long- short-wavelength perturbations destabilize tubes. Numerical simulations...

10.1103/physreve.109.044403 article EN Physical review. E 2024-04-03

The Gaussian (saddle splay) rigidity of fluid membranes controls their equilibrium topology but is notoriously difficult to measure. In lipid mixtures, typical living cells, linear interfaces separate liquid ordered (LO) from disordered (LD) bilayer phases at subcritical temperatures. Here we consider such supported by curved supports that thereby control the membrane curvatures. We show how spectral analysis fluctuations LO-LD interface provides a novel way measuring difference in between...

10.1103/physrevlett.125.188002 article EN cc-by Physical Review Letters 2020-10-28

Utilising Onsager's variational formulation, we derive dynamical equations for the relaxation of a fluid membrane tube in limit small deformation, allowing contrast solvent viscosity across and variations surface tension due to incompressibility. We compute rates, recovering known results case purely axis-symmetric perturbations making new predictions higher order (azimuthal) $m$-modes. analyse long short wavelength limits these modes by use various asymptotic arguments. incorporate...

10.1039/d0sm01290d article EN Soft Matter 2020-01-01

We propose and analyse an active hydrodynamic theory that characterises the effects of scaffold protein anillin. Anillin is found at major sites cortical activity, such as adherens junctions cytokinetic furrow, where canonical regulator actomyosin remodelling small GTPase, RhoA. RhoA acts via intermediary 'effectors' to increase both rates activation myosin motors polymerisation actin filaments. has been shown this action - improving critical in signalling pathway without altering essential...

10.48550/arxiv.2402.07430 preprint EN arXiv (Cornell University) 2024-02-12

Morphodynamic descriptions of fluid deformable surfaces are relevant for a range biological and soft matter phenomena, spanning materials that can be passive or active, as well ordered topological. However, principled, geometric formulation the correct hydrodynamic equations has remained opaque, with objective rates proving central, contentious issue. We argue this is due to conflation several important notions must disambiguated when describing surfaces. These Eulerian Lagrangian...

10.48550/arxiv.2406.18014 preprint EN arXiv (Cornell University) 2024-06-25

Membrane tubes are essential structural features in cells that facilitate biomaterial transport and inter- intracellular signalling. The shape of these can be regulated by the proteins surround adhere to them. We study stability a biomembrane tube coated with combining linear analysis, out-of-equilibrium hydrodynamic calculations, numerical solutions Helfrich-like membrane model. Our analysis demonstrates both long short-wavelength perturbations destabilise tubes. Numerical simulations...

10.1101/2022.09.29.510025 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2022-09-29

The cytoskeletal component actomyosin is a canonical example of active matter since the powerstroke cycle locally converts chemical energy in form adenoside triphosphate (ATP) into mechanical work for remodelling. Observing myosin II minifilaments as they remodel actin {\it vitro}, we now report that, at high concentrations ATP, meta-stable swirling patterns that are characterised by recurrent vortex- and spiral-like motifs, whereas low such structures give way to aster-like patterns. This...

10.48550/arxiv.2108.00764 preprint EN other-oa arXiv (Cornell University) 2021-01-01

Living systems are chiral on multiple scales, from constituent biopolymers to large scale morphology, and their active mechanics is both driven by components serves generate morphologies. We describe the of fluid membranes in coordinate-free form, with focus contributions stress. These geometric `odd elastic' forces response mean curvature gradients but directed perpendicularly. As a result, they induce tangential membrane flows that circulate around maxima minima curvature. When normal...

10.48550/arxiv.2306.17767 preprint EN other-oa arXiv (Cornell University) 2023-01-01

Morphodynamic equations governing the behaviour of active nematic fluids on deformable curved surfaces are constructed in large deformation limit. Emphasis is placed formulation objective rates that account for normal deformations whilst ensuring tangential flows Eulerian, and use surface derivative (rather than covariant derivative) free energy, which elastically couples local order to out-of-plane bending surface. Focusing geometry its dynamical interplay with hydrodynamics, several...

10.48550/arxiv.2204.13930 preprint EN other-oa arXiv (Cornell University) 2022-01-01
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