Naim Siddique

ORCID: 0009-0003-5710-7511
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About
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Research Areas
  • Probiotics and Fermented Foods
  • Milk Quality and Mastitis in Dairy Cows
  • Genomics and Phylogenetic Studies
  • Bacteriophages and microbial interactions
  • Radioactive element chemistry and processing
  • Mycobacterium research and diagnosis
  • Plant Pathogenic Bacteria Studies
  • Biopolymer Synthesis and Applications
  • Enterobacteriaceae and Cronobacter Research
  • Microbial Metabolism and Applications
  • Extraction and Separation Processes
  • Nuclear Physics and Applications

Gazipur Agricultural University
2024-2025

Bangladesh Agricultural Research Institute
2025

Pakistan Institute of Nuclear Science and Technology
2006

ABSTRACT Escherichia coli is an important antibiotic-resistant pathogen in mastitis, with broader public health implications. We report the genomes of two E. strains, MBBL4 and MBBL5, isolated from mastitic cow milk. The draft genomes, covering 4.6 Mbp each, revealed 57.5% GC content 100× sequencing depth.

10.1128/mra.01205-24 article EN Microbiology Resource Announcements 2025-01-29

ABSTRACT We report, for the first time, draft genomes of four multidrug-resistant Pseudomonas asiatica strains isolated from milk (2M1), feces (2F1 and 2F2), farm soil (2S1) samples dairy cows with clinical mastitis. The assembled these were 5.7 Mbp, 62.8% G + C content, 50× genome coverage.

10.1128/mra.00907-24 article EN Microbiology Resource Announcements 2024-10-15

Abstract Enterococcus faecium , a promising probiotic, combats pathogens, supports gut health, strengthens immunity, and provides natural approach to address the escalating global challenge of antimicrobial resistance. This study aimed investigate genome E. MBBL3, isolated from healthy cow milk, assess its probiotic potential activity against pathogens causing bovine mastitis. The strain was analyzed through whole sequencing, along with in-vitro in-silico assessments were conducted determine...

10.1101/2025.01.07.631658 preprint EN cc-by-nc bioRxiv (Cold Spring Harbor Laboratory) 2025-01-08

ABSTRACT Milk from cows with mastitis is a primary source of bacteria harboring antibiotic resistance genes (ARGs), including Klebsiella pneumoniae . We present the genome sequence K. strain MBBL2 isolated mastitic cow milk, which contains numerous ARGs and virulence-associated potentially pathogenic to humans.

10.1128/mra.01204-24 article EN Microbiology Resource Announcements 2025-01-29

ABSTRACT We present the draft genome of Escherichia coli strain MBBL3, a virulent and antimicrobial-resistant pathogen isolated from milk cow suffering clinical mastitis. The assembled spans 4,713,190 base pairs, organized into 115 contigs, harbors 52 antimicrobial resistance genes (ARGs) alongside 25 virulence factor (VFGs).

10.1128/mra.01260-24 article EN Microbiology Resource Announcements 2025-02-18

is a potential probiotic bacteria isolated from diverse sources. However, strains milk, especially raw milk of healthy cows, have not been thoroughly studied. Here, we report the draft genome sequence

10.1128/mra.00252-24 article EN Microbiology Resource Announcements 2024-07-18

Pediococcus pentosaceus is well known for its probiotic properties, including roles in improving health, antimicrobial production, and enhancing fermented food quality. This study aimed to comprehensively analyze the whole genome of P . MBBL6, isolated from healthy cow milk, assess potentials. a milk at BSMRAU dairy farm, Gazipur, Bangladesh, underwent comprehensive genomic analysis, sequencing, assembly, annotation, phylogenetic comparison, assessment metabolic pathways secondary...

10.1371/journal.pone.0316270 article EN cc-by PLoS ONE 2024-12-26

ABSTRACT We sequenced the genomes of three multidrug-resistant Pseudomonas putida strains namely 11CM-M1, 11CM-F1, and 11CM-S1, isolated from milk, feces, farm soil samples collected dairy cows with clinical mastitis. The assembled draft these P. were approximately 5.6 Mbp, a GC content 62.4%.

10.1128/mra.00886-24 article EN Microbiology Resource Announcements 2024-10-15

Streptococci are the primary cause of mastitis, significantly impacting dairy industry economically. This study aimed to explore molecular epidemiology, antimicrobial resistance, and virulence characteristics Streptococcus spp. isolated from milk, feces, environment cows with mastitis. Sixty (60) samples (milk = 20, feces 20 soil 20) clinical mastitis (CM) were purposively collected examined. Samples enriched in Luria Bertani broth (LB) was on Modified Edwards Medium confirmed by ribosomal...

10.3329/jscitr.v6i1.77358 article EN cc-by Journal of Science and Technology Research 2024-12-18

ABSTRACT We sequenced the whole genome of Enterococcus faecium MBBL3, isolated from healthy cow milk. The draft MBBL3 is 2,971,195 bp with 95.61× coverage, spanned over 106 contigs.

10.1128/mra.00926-24 article EN Microbiology Resource Announcements 2024-12-10
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