Nachiket Shankar

ORCID: 0009-0004-9785-3997
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About
Contact & Profiles
Research Areas
  • Gut microbiota and health
  • Clostridium difficile and Clostridium perfringens research
  • Tryptophan and brain disorders
  • Plant-Microbe Interactions and Immunity
  • Microbial Community Ecology and Physiology
  • Legume Nitrogen Fixing Symbiosis
  • Toxoplasma gondii Research Studies
  • Cytomegalovirus and herpesvirus research
  • Soil Carbon and Nitrogen Dynamics
  • RNA and protein synthesis mechanisms
  • Genomics and Phylogenetic Studies
  • Insect symbiosis and bacterial influences
  • Bacteriophages and microbial interactions
  • Immune Cell Function and Interaction
  • Ecology and Vegetation Dynamics Studies
  • Genetic Mapping and Diversity in Plants and Animals
  • Mycorrhizal Fungi and Plant Interactions

University of Massachusetts Boston
2020-2024

National Centre for Biological Sciences
2014

Tata Institute of Fundamental Research
2014

Abstract Background Host-associated microbiomes, the microorganisms occurring inside and on host surfaces, influence evolutionary, immunological, ecological processes. Interactions between microbiome affect metabolism contribute to adaptation changing environments. Meta-analyses of host-associated bacterial communities have potential elucidate global-scale patterns microbial community structure function. It is possible that surface-associated (external) microbiomes respond more strongly...

10.1186/s13059-019-1908-8 article EN cc-by Genome biology 2020-02-03

Sequential lytic cycles driven by cascading transcriptional waves underlie pathogenesis in the apicomplexan parasite Toxoplasma gondii. This parasite's unique division internal budding, short cell cycle, and jumbled up classically defined cycle stages have restrained in-depth program analysis. Here, unbiased transcriptome chromatin accessibility maps throughout are established at single-cell level. Correlated pseudo-timeline assemblies of expression profiles versus level transition points...

10.1038/s41467-024-51011-7 article EN cc-by-nc-nd Nature Communications 2024-08-28

Abstract The role of the microbiome in shaping host phenotype has emerged as a critical area investigation, with implications ecology, evolution, and health. complex dynamic interactions involving plants their diverse rhizosphere microbial communities are influenced by multitude factors, including but not limited to soil type, environment, plant genotype. Understanding impact these factors on community assembly is key yielding host-specific robust benefits for plants, yet remains...

10.1101/2023.09.06.556126 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-09-06

The role of the microbiome in shaping host's phenotype has emerged as a critical area investigation, with implications ecology, evolution, and host health. complex dynamic interactions involving plants their diverse rhizospheres' microbial communities are influenced by multitude factors, including but not limited to soil type, environment, plant genotype. Understanding impact these factors on community assembly is key yielding host-specific robust benefits for plants, yet it remains...

10.3390/microorganisms11122932 article EN cc-by Microorganisms 2023-12-06
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