Mahsa Nafisi

ORCID: 0009-0005-3983-9764
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About
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Research Areas
  • Single-cell and spatial transcriptomics
  • Gene expression and cancer classification
  • Advanced biosensing and bioanalysis techniques
  • Vibrio bacteria research studies
  • Bioinformatics and Genomic Networks
  • Listeria monocytogenes in Food Safety
  • Pneumonia and Respiratory Infections
  • Antibiotic Use and Resistance
  • Gene Regulatory Network Analysis
  • Plant Pathogenic Bacteria Studies
  • Helicobacter pylori-related gastroenterology studies
  • Antibiotic Resistance in Bacteria

University of California, San Diego
2023-2024

La Jolla Bioengineering Institute
2023-2024

Shahrekord University
2010

Abstract In situ transcriptomic techniques promise a holistic view of tissue organization and cell-cell interactions. There has been surge multiplexed RNA in mapping but their application to human tissues limited due large size, general lower quality high autofluorescence. Here we report DART-FISH, padlock probe-based technology capable profiling hundreds thousands genes centimeter-sized sections. We introduce an omni-cell type cytoplasmic stain that substantially improves the segmentation...

10.1038/s41467-024-46437-y article EN cc-by Nature Communications 2024-03-20

In situ transcriptomic techniques promise a holistic view of tissue organization and cell-cell interactions. Recently there has been surge multiplexed RNA in but their application to human tissues clinical biopsies limited due large size, general lower quality high background autofluorescence. Here we report DART-FISH, versatile padlock probe-based technology capable profiling hundreds thousands genes centimeter-sized sections at cellular resolution. We introduced an omni-cell type...

10.1101/2023.08.16.553610 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-08-18
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