Shenyuan Xu

ORCID: 0000-0002-9903-1944
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About
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Research Areas
  • Enzyme Catalysis and Immobilization
  • Enzyme Structure and Function
  • Aldose Reductase and Taurine
  • Viral gastroenteritis research and epidemiology
  • Viral Infections and Immunology Research
  • Biochemical and Molecular Research
  • Mass Spectrometry Techniques and Applications
  • Metabolomics and Mass Spectrometry Studies
  • Escherichia coli research studies
  • Enzyme Production and Characterization
  • Advanced Chemical Sensor Technologies
  • Protein Structure and Dynamics
  • Traffic Prediction and Management Techniques
  • Microbial Metabolic Engineering and Bioproduction
  • Human Mobility and Location-Based Analysis
  • Biofuel production and bioconversion
  • Satellite Image Processing and Photogrammetry
  • Sepsis Diagnosis and Treatment
  • Plant nutrient uptake and metabolism
  • Remote-Sensing Image Classification
  • RNA Research and Splicing
  • Studies on Chitinases and Chitosanases
  • Protein Kinase Regulation and GTPase Signaling
  • Hepatitis Viruses Studies and Epidemiology
  • Protein Tyrosine Phosphatases

Miami University
2017-2025

Zhejiang University of Technology
2021-2024

Hunan University
2020-2023

Shanghai Ocean University
2017-2020

Shanghai Academy of Spaceflight Technology
2020

With deepening urbanization and Internet of Vehicles (IoV) applications, the number private cars has been increasing in recent years. However, because surging is not compatible with limited road resources, car users have had unsatisfactory commute experiences during their daily travel. In this work, we focus on improving users' experience based an analysis IoV trajectory data a privacy-preserving way. Our idea following observations: 1) closely related to departure time travel cost 2) most...

10.1109/jiot.2023.3317639 article EN IEEE Internet of Things Journal 2023-09-20

Abstract Carbonyl reductases are useful for producing optically active alcohols from their corresponding prochiral ketones. Herein, we applied a computer‐assisted strategy to increase the thermostability of previously constructed carbonyl reductase, Ls CR M4 (N101D/A117G/F147L/E145A), which showed an outstanding activity in synthesis ticagrelor precursor (1 S )‐2‐chloro‐1‐(3,4‐difluorophenyl)ethanol. The stability changes introduced by mutations at flexible sites were predicted using...

10.1002/bit.28662 article EN Biotechnology and Bioengineering 2024-01-24

K-Ras, a molecular switch that regulates cell growth, apoptosis and metabolism, is activated when it undergoes conformation change upon binding GTP deactivated following the hydrolysis of to GDP. Hydrolysis in water accelerated by coordination where adopts high-energy approaching transition state. The G12A mutation reduces intrinsic K-Ras an unexplained mechanism. Here, crystal structures complex with GDP, GTP, GTPγS GppNHp, Q61A are reported. In K-Ras-GTP complex, I region significant...

10.1107/s2059798317015418 article EN Acta Crystallographica Section D Structural Biology 2017-11-10

Individuals driving private cars in the urban environments to fulll their travel needs have become one of major daily activities. In particular, unlike with floating such as taxis or ride-hailing vehicles, behaviors exhibit a certain degree regularity based on demands. Understanding behavior facilitates many applications, e.g., intelligent transportation, smart city planning, and location-based services (LBS). this paper, we focus extracting regular trajectory data analysis. Specifically,...

10.1109/tvt.2020.3043434 article EN IEEE Transactions on Vehicular Technology 2020-12-01

Recognition of specific cell surface glycans, mediated by the VP8* domain spike protein VP4, is essential first step in rotavirus (RV) infection. Due to lack direct structural information virus-ligand interactions, molecular basis ligand-controlled host ranges major human RVs (P[8] and P[4]) P[II] genogroup remains unknown. Here, through characterization a minor RV (P[19]) that can infect both animals (pigs) humans, we made an important advance fill this knowledge gap solving crystal...

10.1371/journal.ppat.1006707 article EN cc-by PLoS Pathogens 2017-11-14

Abstract Enzyme engineering usually generates trade‐offs between activity, stability, and selectivity. Herein, we report semirational of an aldo–keto reductase (AKR) Km AKR for simultaneously enhancing its thermostability catalytic activity. Previously, constructed M9 (W297H/Y296W/K29H/Y28A/T63M/A30P/T302S/N109K/S196C), which showed outstanding activity towards t ‐butyl 6‐chloro‐(3 R ,5 S )‐dihydroxyhexanoate ((3 )‐CDHH), 6‐cyano‐(3 )‐dihydroxyhexanoate, the key chiral building blocks...

10.1002/bit.27913 article EN Biotechnology and Bioengineering 2021-08-10

Aldo-keto reductases (AKRs) are important biocatalysts that can be used to synthesize chiral pharmaceutical alcohols. In this study, the catalytic activity and stereoselectivity of a NADPH-dependent AKR from Kluyveromyces dobzhanskii (KdAKR) toward t-butyl 6-chloro (5S)-hydroxy-3-oxohexanoate ((5S)-CHOH) were improved by mutating its residues in loop regions around substrate-binding pocket. And thermostability KdAKR was consensus sequence method targeted on flexible regions. The best mutant...

10.1002/bit.28535 article EN Biotechnology and Bioengineering 2023-08-29

Initial cell attachment of rotavirus (RV) to specific surface glycan receptors, which is the essential first step in RV infection, mediated by VP8* domain spike protein VP4. Recently, human histo-blood group antigens (HBGAs) have been identified as receptors or factors for strains. strains P[4] and P[8] genotypes P[II] genogroup share common recognition Lewis b (Leb) H type 1 antigens, however, molecular basis receptor major RVs remains unknown due lack experimental structural information....

10.1371/journal.ppat.1008386 article EN cc-by PLoS Pathogens 2020-03-24

At present, many Deep Neural Network (DNN) methods have been widely used for hyperspectral image classification. Promising classification results obtained by utilizing such models. However, due to the complexity and depth of model, increasing number model parameters may lead an overfitting especially when training data are insufficient. As performance mainly depends on sufficient a large network with reasonably optimized hyperparameters, using DNNs requires better hardware conditions time....

10.3390/e23010020 article EN cc-by Entropy 2020-12-25

Background: Pancreatic cancer is the most lethal of all human cancers. The disease has no obvious symptoms in its early stages and majority cases, goes undetected until it advanced to point that surgery longer a viable option or metastasized other organs. absence reliable sensitive biomarkers for detection pancreatic contributes poor ability detect before progresses an untreatable stage. Objectives: Here, orthotopic xenograft mouse model was investigated determine if urinary metabolic could...

10.3390/metabo15030142 article EN cc-by Metabolites 2025-02-20

Sepsis-associated acute kidney injury (SA-AKI) is a significant problem in the critically ill that causes increased death. Emerging understanding of this disease implicates metabolic dysfunction its pathophysiology. This study sought to identify specific pathways amenable potential therapeutic intervention. Using murine model sepsis, blood and tissue samples were collected for assessment systemic inflammation, function, renal injury. Nuclear magnetic resonance (NMR)-based metabolomics...

10.1152/ajprenal.00582.2020 article EN AJP Renal Physiology 2021-04-12

Abstract The aldo‐keto reductase (AKR) Kd AKR from Kluyvermyces dobzhanskii can reduce t ‐butyl 6‐chloro‐(5 S )‐hydroxy‐3‐oxohexanoate ((5 )‐CHOH) to 6‐chloro‐(3 R ,5 )‐dihydroxyhexanoate ((3 )‐CDHH), which is the key chiral intermediate of rosuvastatin. Herein, a computer‐aided design that combined use PROSS platform and consensus was employed improve stability previously constructed mutant M6 . Experimental verification revealed S196C, T232A, V264I V45L produced improved thermostability...

10.1002/biot.202300637 article EN Biotechnology Journal 2024-03-01

Significance Group A rotaviruses cause severe gastroenteritis in infants and young children worldwide, with P[II] genogroup (RVs) responsible for >90% of global cases. Existing RV vaccines are successful many developed countries, but their efficacy remains poor developing which could be due to lack cross protection between genotypes more common countries other P-type RVs less countries. In this study, crystal structures major VP8* receptor domains complex Lewis epitope–containing...

10.1073/pnas.2107963118 article EN Proceedings of the National Academy of Sciences 2021-09-02

Metabolic profiling of cell line and tissue extracts involves sample processing that includes a drying step prior to re-dissolving the or in buffer for analysis by GC/LC-MS NMR. Two most commonly used techniques are centrifugal evaporation under vacuum (SpeedVac) lyophilization. Here, NMR spectroscopy was determine how metabolic profiles hydrophilic three human pancreatic cancer lines, MiaPaCa-2, Panc-1 AsPC-1, were influenced choice technique. In each 40-50 metabolites identified as having...

10.3390/metabo9110256 article EN cc-by Metabolites 2019-10-31

Aldo-keto reductases-catalyzed transformations of ketones to chiral alcohols have become an established biocatalytic process step in the pharmaceutical industry. Previously, we discovered aldo-keto reductase (AKR) from Kluyveromyces marxianus that is active aliphatic tert-butyl 6-substituted (5R/S)-hydroxy-3-oxohexanoates, but it inactive aromatic ketones. In order acquire excellent KmAKRmutant for ensuring simultaneous improvement activity-thermostability toward...

10.1002/biot.202100130 article EN Biotechnology Journal 2021-06-14

Abstract β-1,3-glucanase can specifically hydrolyze glucans to oligosaccharides and has potential applications in biotechnology. We used the metatranscriptomic technology discover a thermophilic from compost. The phylogenetic study shows that it belongs family 16 glycoside hydrolase (GH16) is most homologous with an enzyme Streptomyces sioyaensis , actinobacterium. It activity of 146.9 U/mg optimal reaction condition (75 °C pH 5.5). Its catalytic domain was crystallized diffracted 1.14 Å...

10.1186/s40643-021-00449-4 article EN cc-by Bioresources and Bioprocessing 2021-10-17

Abstract Pullulanase is a well-known debranching enzyme that can specifically hydrolyze α-1,6-glycosidic linkages in starch and oligosaccharides, however, it suffers from low stability catalytic efficiency under industrial conditions. In the present study, four residues (A365, V401, H499, T504) lining pocket of Anoxybacillus sp. AR-29 pullulanase (PulAR) were selected for site-directed mutagenesis (SDM) by using structure-guided consensus approach. Five beneficial mutants (PulAR-A365V,...

10.1186/s40643-022-00516-4 article EN cc-by Bioresources and Bioprocessing 2022-03-21

Abstract Initial cell attachment of rotavirus (RV) to specific surface glycans, which is the essential first step in RV infection, mediated by VP8* domain spike protein VP4. Recently, human histo-blood group antigens (HBGAs) have been identified as ligands or receptors for strains. strains P[4] and P[8] genotypes P[II] genogroup share common recognition Lewis b H type 1 antigens, while P[6], one other P[II], only recognizes antigen. The molecular basis receptor major RVs remains unknown due...

10.1101/512301 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2019-01-04

Abstract Pentapeptide repeat proteins (PRPs) represent a large superfamily with more than 38 000 sequences in nearly 3500 species, the majority belonging to cyanobacteria but represented among all branches of life. PRPs contain at least eight consecutive pentapeptide repeats consensus (A/C/S/V/T/L/I)(D/N/S/K/E/I/R)(L/F)(S/T/R/E/Q/K/V/D)(G/D/E/N/R/Q/K). fold into right‐handed quadrilateral β helices, also known as repeat‐five‐residue (Rfr)‐folds, four comprising single coil, ~90 ° change...

10.1002/prot.25969 article EN Proteins Structure Function and Bioinformatics 2020-06-17
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