Juan J. Calix

ORCID: 0000-0003-0424-6721
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Research Areas
  • Pneumonia and Respiratory Infections
  • Antibiotic Resistance in Bacteria
  • Vibrio bacteria research studies
  • Bacterial Infections and Vaccines
  • Pneumocystis jirovecii pneumonia detection and treatment
  • Antimicrobial Resistance in Staphylococcus
  • Carbohydrate Chemistry and Synthesis
  • Enterobacteriaceae and Cronobacter Research
  • Streptococcal Infections and Treatments
  • Antibiotic Use and Resistance
  • Escherichia coli research studies
  • Tuberculosis Research and Epidemiology
  • Respiratory viral infections research
  • Plant Pathogenic Bacteria Studies
  • Antibiotics Pharmacokinetics and Efficacy
  • Healthcare professionals’ stress and burnout
  • Bacterial Identification and Susceptibility Testing
  • Global Maternal and Child Health
  • Complement system in diseases
  • Neonatal Respiratory Health Research
  • Stress and Burnout Research
  • Mycobacterium research and diagnosis
  • Immunodeficiency and Autoimmune Disorders
  • Clostridium difficile and Clostridium perfringens research
  • Congenital Diaphragmatic Hernia Studies

University of Alabama at Birmingham
2009-2025

University of Alabama at Birmingham Hospital
2025

Washington University in St. Louis
2018-2022

Jose Matias Delgado University
2017

University of New Orleans
1987

Recently, 2 serologically and biochemically distinct subtypes—11Aα 11Aβ—were discovered among serotype 11A isolates of Streptococcus pneumoniae. Sequence comparison the capsular polysaccharide synthesis (cps) loci subtypes identified disruption wcjE gene, a putative O-acetyltransferase, as genetic hallmark 11Aβ phenotype. Directed in vitro an 11Aα strain switched to phenotype, confirming role played by gene divergence between subtypes. Furthermore, sequences from 7 clinical strains each...

10.1086/653123 article EN The Journal of Infectious Diseases 2010-05-27

The polysaccharide (PS) capsule is essential for immune evasion and virulence of Streptococcus pneumoniae. Existing pneumococcal vaccines are designed to elicit anticapsule antibodies; however, the effectiveness these being challenged by emergence new types or variants. Herein, we characterize a newly discovered type, 33E, that appears have repeatedly emerged from vaccine type 33F via an inactivation mutation in glycosyltransferase gene, wciE. Structural analysis demonstrated 33E share...

10.1016/j.jbc.2023.105085 article EN cc-by Journal of Biological Chemistry 2023-07-24

Streptococcus pneumoniae can produce a wide breadth of antigenically diverse capsule types, fact that poses looming threat to the success vaccines target pneumococcal polysaccharide (PS) capsule. Yet, many types remain undiscovered and/or uncharacterized. Prior sequence analysis synthesis (

10.1128/jcm.00024-23 article EN Journal of Clinical Microbiology 2023-03-27

ABSTRACT Despite the emerging impact of serogroup 11 serotypes in Streptococcus pneumoniae epidemiology, structures capsule types have not been fully elucidated, particularly locations O -acetyl substitutions. Here, we report complete serotype 11B, 11C, and 11F polysaccharides a revision to 11A capsular polysaccharide using nuclear magnetic resonance (NMR). All shared linear, tetrasaccharide backbone with pendant phosphopolyalcohol. Three four saccharides are conserved all serotypes. The...

10.1128/jb.05034-11 article EN Journal of Bacteriology 2011-07-30

Abstract Background Due to elevated genetic divergence between different Carbapenem-resistant (CR) A. baumannii (Ab) lineages, CRAb isolates belonging clonal groups (CGs) currently emerging in the U.S. may display traits that differ from those of unrelated international CGs. Variations CG-associated physiology could especially affect choice and interpretation antimicrobial susceptibility tests (AST) for these multidrug resistant lineages. Methods We integrated multimodal AST comparative...

10.1093/ofid/ofae631.1524 article EN cc-by Open Forum Infectious Diseases 2025-01-29

Abstract Introduction Treatment of infections in patients with burn injuries is challenging due to altered antimicrobial pharmacokinetics. Continuous infusion β‐lactam therapy may be a useful stewardship strategy improve pharmacodynamic target attainment this population. Case Summaries This report highlights the use continuous ceftolozane/tazobactam (C/T) two extensive total body surface area (TBSA) burns, suspected augmented renal clearance (ARC), and bloodstream caused by Pseudomonas...

10.1002/phar.70019 article EN cc-by-nc Pharmacotherapy The Journal of Human Pharmacology and Drug Therapy 2025-04-15

A survey of nasopharyngeal carriage penicillin nonsusceptible pneumococcal (PNSp) isolates was conducted among 1192 children attending 62 day care centers in Brazil, where vaccination has not been routinely introduced. Nasopharyngeal detected 686 (57.6%) infants, and 178 (25.9%) them carried PNSp isolates. Being less than 24 months age, hospitalization the previous 3 months, recurrent acute otitis media were independently associated with PNSp. Serotypes 14, 23F, 19A, 6A, 6B 19F most common...

10.1097/inf.0b013e3181af7e90 article EN The Pediatric Infectious Disease Journal 2009-12-24

ABSTRACT Streptococcus pneumoniae is a significant bacterial pathogen that expresses >90 capsule serotypes. Conventional serotyping methods assume each serotype genetically and antigenically distinct entity; however, recent investigations have revealed pneumococcal isolates cannot be unambiguously serotyped because they share the properties of more than one serotype. Here, we employed novel method NMR spectroscopy to examine clinical sharing serotypes 11A 11E. These ambiguous were...

10.1128/jcm.02695-13 article EN Journal of Clinical Microbiology 2013-12-19

Background. Streptococcus pneumoniae is a significant pathogen capable of expressing protective and antigenically diverse capsules. To better understand the molecular basis capsular antigenic diversity, we investigated hypothetical serological role wcjE, which encodes capsule O-acetyltransferase, in vaccine-targeted serotype 9V related 9A.

10.1093/infdis/jir593 article EN The Journal of Infectious Diseases 2011-09-09

Reports conflict regarding which lectin-microbial ligand interactions elicit a protective response from the lectin pathway (LP) of complement. Using fluorescent microscopy, we demonstrate human ficolin-2 binds to Streptococcus pneumoniae serotype 11A capsule polysaccharide dependent on O-acetyltransferase gene wcjE. This triggers complement deposition and promotes opsonophagocytosis encapsulated pneumococci. Even partial loss expression through wcjE mutation abrogated bacterial killing....

10.3389/fimmu.2022.841062 article EN cc-by Frontiers in Immunology 2022-03-28

The ongoing injection drug use (IDU) crisis in the United States has been complicated by an emerging epidemic of Staphylococcus aureus IDU-associated bloodstream infections (IDU-BSI).We performed a case-control study comparing S. IDU-BSI and non-IDU BSI cases identified large US Midwestern academic medical center between Jan 1, 2016 Dec 21, 2019. We obtained whole-genome sequences 154 91 cases, which were matched with clinical data. phylogenetic comparative genomic analyses to investigate...

10.1038/s43856-021-00053-9 article EN cc-by Communications Medicine 2021-11-30

Abstract Temporal analysis of Acinetobacter calcoaceticus-baumannii complex isolates in a large, US healthcare system demonstrated decreased occurrence antibiotic-susceptible between November and May, while resistant isolate was temporally stable. This resulted 50%–100% seasonal increases resistance rates. work offers insight into the phenomenon Gram-negative pathogen seasonality.

10.1093/ofid/ofz245 article EN cc-by-nc-nd Open Forum Infectious Diseases 2019-05-22

Eliminating carbapenem-resistant Acinetobacter baumannii (CRAb) disease requires comprehensive knowledge of how this noncommensal organism propagates among at-risk hosts. We molecularly characterized an ongoing surge CRAb cases patients in a Midwest US healthcare system, which coincided with sustained reductions hospital-acquired infections and falloffs associated distinctly more resistant antibiotypes. Genome sequencing revealed isolates belonged to emergent Pasteur scheme sequence type 499...

10.1093/infdis/jiac427 article EN The Journal of Infectious Diseases 2022-10-25

We retrospectively compared the clinical characteristics of hospital-acquired (HA) vs non-hospital-acquired (nHA) Acinetobacter calcoaceticus-baumannii complex isolates in a large health care system St. Louis, Missouri, from 2007 to 2017. More than 60% total were nHA; they predominantly nonrespiratory sources and exhibited ~40% carbapenem resistance rates stably persisted, though HA occurrence waned.

10.1093/ofid/ofz423 article EN cc-by-nc-nd Open Forum Infectious Diseases 2019-10-01

Abstract Acinetobacter baumannii ( Ab ) disease in the U.S. is commonly attributed to outbreaks of one or two monophyletic carbapenem resistance (CR) lineages that vary by region. However, there limited knowledge regarding epidemiology and population structure Deep South, few studies compare contemporary CR carbapenem-susceptible (Cs) , despite prevalence latter. We performed a 12-year time series analysis cases large hospital Birmingham, AL, 89 isolates from an ongoing surveillance project...

10.1101/2024.03.22.24304710 preprint EN medRxiv (Cold Spring Harbor Laboratory) 2024-03-25

Abstract Background Acinetobacter baumannii (Ab) disease in the United States is commonly attributed to outbreaks of 1 or 2 monophyletic carbapenem resistance (CR) Ab lineages that vary by region. However, there limited knowledge regarding CRAb epidemiology and population structures U.S. Deep South, few studies compare contemporary CR carbapenem-susceptible (Cs) Ab, despite relative prevalence latter. Methods We performed a multiyear analysis 2462 cases large healthcare system Birmingham,...

10.1093/ofid/ofae458 article EN cc-by Open Forum Infectious Diseases 2024-08-08

ABSTRACT A multiplexed opsonophagocytosis assay (MOPA) was developed as a cost-effective, high-throughput biological to evaluate the efficacy of pneumococcal vaccines by in vitro measurement opsonophagocytic activity anti-capsular antibodies. Here, we report draft genomes 36 strains Streptococcus pneumoniae for use reference MOPA.

10.1128/mra.00553-24 article EN Microbiology Resource Announcements 2024-08-20

Abstract Background Acinetobacter baumannii ( Ab ) is a global health threat notorious for causing hospital-acquired (HA) infections, though many infections are community-acquired (CA). Investigations describing contemporaneous, clinically-relevant CA and HA populations, lacking. Methods We conducted retrospective ecological analysis of 2042 clinical isolates identified from 2007 to 2017 in the BJC HealthCare System (BJC), multi-hospital system located around greater metropolitan area St....

10.1101/576868 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2019-03-14
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