Ruiyu Wang

ORCID: 0000-0003-1608-140X
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About
Contact & Profiles
Research Areas
  • Spectroscopy and Quantum Chemical Studies
  • Molecular Biology Techniques and Applications
  • Electrostatics and Colloid Interactions
  • bioluminescence and chemiluminescence research
  • Analytical chemistry methods development
  • Electrochemical Analysis and Applications
  • nanoparticles nucleation surface interactions
  • Catalytic Processes in Materials Science
  • Acute Myeloid Leukemia Research
  • Advanced biosensing and bioanalysis techniques
  • Origins and Evolution of Life
  • Nanomaterials for catalytic reactions
  • Molecular Sensors and Ion Detection
  • Mesenchymal stem cell research
  • Catalysis and Oxidation Reactions
  • Pesticide and Herbicide Environmental Studies
  • Nanopore and Nanochannel Transport Studies
  • Ultrasound in Clinical Applications
  • Pesticide Residue Analysis and Safety
  • Machine Learning in Materials Science
  • Industrial Automation and Control Systems
  • Lignin and Wood Chemistry
  • Iron oxide chemistry and applications
  • Surface Modification and Superhydrophobicity
  • RNA Research and Splicing

Temple University
2019-2025

University of Maryland, College Park
2024-2025

University of Science and Technology Beijing
2025

Temple College
2021-2025

Affiliated Hospital of Southwest Medical University
2024-2025

Qiqihar University
2024-2025

State Key Laboratory for Advanced Metals and Materials
2025

Center for Physical Sciences and Technology
2025

East China University of Science and Technology
2010-2024

First Affiliated Hospital of Sichuan Medical University
2024

The molecular details of an electrocatalytic interface play essential role in the production sustainable fuels and value-added chemicals. Many electrochemical reactions exhibit strong cation-dependent activities, but how cations affect reaction kinetics is still elusive. We report effect (K+, Li+, Ba2+) on interfacial water structure using second-harmonic generation (SHG) classical dynamics (MD) simulation. second- (χH2O(2)) third-order (χH2O(3)) optical susceptibilities Pt are smaller...

10.1021/jacs.3c09128 article EN Journal of the American Chemical Society 2024-01-16

Even though nucleation is ubiquitous in different science and engineering problems, investigating extremely difficult due to the complicated ranges of time length scales involved. In this work, we simulate NaCl both molten aqueous environments using enhanced sampling all-atom molecular dynamics with deep-learning-based estimation reaction coordinates. By incorporating various structural order parameters learning coordinate as a function thereof, achieve significantly improved relative...

10.1021/acs.jpcb.3c06735 article EN The Journal of Physical Chemistry B 2024-01-23

Electric field induced antiferroelectric-ferroelectric phase transition is a double-edged sword for energy storage properties, which not only offers congenital superiority with substantial density but also poses significant challenges such as large polarization hysteresis and poor efficiency, deteriorating the operation service life of capacitors. Here, entropy increase effect utilized to simultaneously break long-range antiferroelectric order locally adjust fourfold commensurate modulated...

10.1038/s41467-025-56194-1 article EN cc-by-nc-nd Nature Communications 2025-01-18

We investigate the hypothesis that mineral/water interfaces played a crucial catalytic role in peptide formation by promoting self-assembly of amino acids. Using classical molecular dynamics simulations, we demonstrate α-alumina(0001) surface exhibits an affinity 4 k B T for individual glycine or GG dipeptide molecules due to hydrogen bonds. In simulations with multiple molecules, surface-bound enhances further adsorption, leading long chains connected bonds between carboxyl and amine groups...

10.1126/sciadv.adt4151 article EN cc-by-nc Science Advances 2025-04-11

Abstract Water/oxide interfaces are ubiquitous on earth and show significant influence many chemical processes. For example, understanding water solute adsorption as well catalytic splitting can help build better fuel cells solar to overcome our looming energy crisis; the interaction between biomolecules water/oxide is one hypothesis explain origin of life. However, knowledge in this area still limited due difficulty studying water/solid interfaces. As a result, research using increasingly...

10.1002/wcms.1537 article EN Wiley Interdisciplinary Reviews Computational Molecular Science 2021-06-02

The development of growth factor-free biomaterials for bone tissue regeneration with anti-infection and anti-inflammatory activities remains challenging. Black phosphorus nanosheets (BPNs), distinctive attributes, including photothermal conversion calcium ion chelation, offer potential use in engineering infection prevention. However, BPNs are prone to oxidation degradation aqueous environments, methods stabilize long-term repair remain insufficient. Herein, zeolitic imidazolate framework-8...

10.1021/acsami.4c05298 article EN ACS Applied Materials & Interfaces 2024-06-14

A highly efficient Ni/N–C catalyst was synthesized by facile pyrolysis of a Ni-MOF, and its catalytic hydrogenolysis performance towards C–O bonds in lignin evaluated detail using diphenyl ether (DPE) as model compound.

10.1039/d0re00040j article EN Reaction Chemistry & Engineering 2020-01-01

Background: The lung ultrasound score was developed for rapidly assessing the extent of ventilation, and it can predict failure to wean various types patients off mechanical ventilation. Whether is also effective COVID-19 unclear. Methods: This single-center, prospective, observational study conducted assess ability 12-region In parallel, we assessed whether right hemidiaphragmatic excursion or previously published predictors weaning apply these patients. Predictive in terms area under...

10.2147/cia.s438714 article EN cc-by-nc Clinical Interventions in Aging 2024-02-01

In this work we examine the nucleation from NaCl aqueous solutions within nano-confined environments, employing enhanced sampling molecular dynamics simulations integrated with machine learning-derived reaction coordinates. Through our simulations, successfully induce phase transitions between solid, liquid, and a hydrated phase, typically observed at lower temperatures in bulk environments. Interestingly, nano-confinement serves to stabilize solid elevate melting points. Our explain these...

10.1039/d4sc04042b preprint EN arXiv (Cornell University) 2024-03-01

Alumina is one of the most abundant minerals and has a wide range industrial applications, with catalysis as important. Of particular relevance for structure mineral/water interface. In this work, water sodium halide adsorption at neutral α-alumina(0001)/water interface are investigated using molecular dynamics simulations. This work demonstrates accuracy chosen model alumina/water shows that high charge density monovalent ions, such Na+ F–, have strong affinity due to specific pattern...

10.1021/acs.jpcc.9b03054 article EN The Journal of Physical Chemistry C 2019-06-13

Acid/base chemistry is an intriguing topic that still constitutes a challenge for computational chemistry. While estimating the acid dissociation constant (or pKa) could shed light on many processes, especially in fields of biochemistry and geochemistry, evaluating relative stability between protonated nonprotonated species often very difficult. Indeed, prerequisite calculating pKa any molecule accurate description energetics water dissociation. Here, we applied constrained molecular...

10.1021/acs.jpclett.9b02913 article EN The Journal of Physical Chemistry Letters 2019-12-13

We investigate the hypothesis that mineral/water interfaces played a crucial catalytic role in peptide formation by promoting self-assembly of amino acids. Using force-field-based molecular dynamics simulations, we demonstrate $\alpha$-alumina (0001) surface exhibits an affinity 4 kBT for individual glycine or GG dipeptide molecules, due to hydrogen bonds formed at both C- and N-termini. In simulations with multiple surface-bound enhances further adsorption, leading long chains connected...

10.26434/chemrxiv-2024-qjq83-v2 preprint EN cc-by-nc-nd 2025-01-03

We investigate the hypothesis that mineral/water interfaces played a crucial catalytic role in peptide formation by promoting self-assembly of amino acids. Using force-field-based molecular dynamics simulations, we demonstrate $\alpha$-alumina (0001) surface exhibits an affinity 4 kBT for individual glycine or GG dipeptide molecules, due to hydrogen bonds formed at both C- and N-termini. In simulations with multiple surface-bound enhances further adsorption, leading long chains connected...

10.26434/chemrxiv-2024-qjq83-v3 preprint EN cc-by-nc-nd 2025-01-10

Cancer remains a leading cause of mortality worldwide, with human exonuclease 1 (EXO1) emerging as key player in DNA repair and damage response pathways, critical for genomic stability tumor evolution. The aim this study was to conduct comprehensive pan-cancer analysis elucidate the multifaceted roles EXO1 various malignancies. Leveraging public databases including TCGA, GTEx, HPA, cBioPortal, UALCAN, STRING, CancerSEA TISIDB database, we examined EXO1's expression, diagnostic potential,...

10.1007/s12672-025-02045-w article EN cc-by-nc-nd Discover Oncology 2025-03-12

Investigating nucleation in charged nanoconfined environments under electric fields is crucial for many scientific and engineering applications. Here we study the of NaCl from aqueous solution near surfaces using machine-learning-augmented enhanced sampling molecular dynamics simulations. Our simulations successfully drive phase transitions between liquid solid phases NaCl. The stabilized fields, particularly at an intermediate surface charge density. We examine which physical...

10.26434/chemrxiv-2024-00f19-v2 preprint EN cc-by-nc-nd 2025-03-20

The significant polarization hysteresis under external fields can be stimulated by long-range ordered distortions, including cation displacements and oxygen octahedral tilts, deteriorating the energy storage performance reliable operation of dielectric capacitors. Here, we propose a strategy localized distortion to craft disordered nanostructure landscape, manifested as strongly polar orthorhombic rocks dissociated in transition region polymorphic nanoclusters strong oxygen-tilted blocks...

10.1021/acsnano.5c02357 article EN ACS Nano 2025-05-04

Investigating nucleation in charged nanoconfined environments under electric fields is crucial for many scientific and engineering applications. Here we study the of NaCl from aqueous solution near surfaces using machine-learning-augmented enhanced sampling molecular dynamics simulations. Our simulations successfully drive phase transitions between liquid solid phases NaCl. The stabilized fields, particularly at an intermediate surface charge density. We examine which physical...

10.1021/jacs.4c16419 article EN Journal of the American Chemical Society 2025-05-09
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