Fangzhi Yu

ORCID: 0000-0003-1676-9116
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About
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Research Areas
  • Advanced biosensing and bioanalysis techniques
  • RNA Interference and Gene Delivery
  • DNA and Nucleic Acid Chemistry
  • interferon and immune responses
  • Nanoplatforms for cancer theranostics
  • CRISPR and Genetic Engineering
  • RNA and protein synthesis mechanisms
  • Virus-based gene therapy research
  • Microfluidic and Capillary Electrophoresis Applications
  • DNA Repair Mechanisms
  • RNA modifications and cancer
  • Nanopore and Nanochannel Transport Studies
  • Biosensors and Analytical Detection
  • Advanced Nanomaterials in Catalysis
  • Adenosine and Purinergic Signaling
  • Electrochemical sensors and biosensors
  • Photodynamic Therapy Research Studies
  • Electrochemical Analysis and Applications
  • Genomics and Chromatin Dynamics
  • Immune Response and Inflammation
  • Molecular Junctions and Nanostructures
  • Metal-Organic Frameworks: Synthesis and Applications
  • Mathematical and Theoretical Epidemiology and Ecology Models
  • Gene Regulatory Network Analysis
  • Biochemical and Molecular Research

National Center for Nanoscience and Technology
2022-2025

University of Chinese Academy of Sciences
2018-2025

Chinese Academy of Sciences
2017-2023

Research Center for Eco-Environmental Sciences
2017-2023

Beijing Administration Institute
2020

Xi'an University of Technology
2009

Abstract Amplified ATP imaging in inflammatory cells is highly desirable. However, the spatial selectivity of current amplification methods limited, that is, signal performed systemically and not a disease site‐specific manner. Here we present versatile strategy, termed enzymatically triggerable, aptamer‐based (ETA‐SA), enables cell‐specific through spatially‐resolved amplification. The ETA‐SA leverages translocated enzyme to activate DNA aptamer probes further drive cascade reactions...

10.1002/anie.202217551 article EN Angewandte Chemie International Edition 2023-02-08

Abstract Tracking spatial and temporal dynamics of bioactive molecules such as enzymes responding to therapeutic treatment is highly important for understanding the related functions. However, in situ molecular imaging at subcellular level during photodynamic therapy (PDT) has been hampered by limitations existing methods. Herein, we present a multifunctional nanoplatform (termed UR‐HAPT) that able simultaneously monitor human apurinic/apyrimidinic endonuclease 1 (APE1) near‐infrared (NIR)...

10.1002/anie.202203238 article EN Angewandte Chemie International Edition 2022-04-12

Abstract Despite significant progress in DNA self‐assembly for interfacing with biology, spatiotemporally controlled regulation of biological process via situ dynamic assembly remains an outstanding challenge. Here, we report optically triggered and disassembly strategy that enables on‐demand activation termination the cyclic GMP‐AMP synthase (cGAS)‐stimulator interferon genes (STING) signaling pathway. In design, activatable hairpin is engineered a photocleavable group at defined site to...

10.1002/anie.202305837 article EN Angewandte Chemie International Edition 2023-06-27

Precise imaging of noncoding RNAs (ncRNAs) in specific organelles allows decoding their functions at subcellular level but lacks advanced tools. Here we present a DNA-based nanobiotechnology for spatially selective ncRNA (e.g., microRNA (miRNA)) mitochondria via an organelle-specific DNA assembly strategy. The target miRNA-initiated hairpins is inhibited by the block toehold-mediated strand displacement reaction can be exclusively activated mitochondria-encoded ribosomal RNA (rRNA)...

10.1021/acs.nanolett.4c05559 article EN Nano Letters 2025-01-27

Homologous recombination (HR), catalyzed in an evolutionarily conserved manner by active RecA/Rad51 nucleofilaments, maintains genomic integrity and promotes biological evolution diversity. The structures of nucleofilaments provide information critical for the entire HR process. By exploiting a unique capillary electrophoresis-laser-induced fluorescence polarization assay, we have discovered form RecA nucleofilament, stimulated ATP hydrolysis, that contains mainly unbound nucleotide sites....

10.1038/celldisc.2016.53 article EN cc-by Cell Discovery 2017-01-17

Abstract Mitochondria, one of the most important organelles, represent a crucial subcellular target for fundamental research and biomedical applications. Despite significant advances in design DNA nanotechnologies variety bio‐applications, dearth strategies that enable mitochondria targeting molecular imaging therapy remains an outstanding challenge this field. In Minireview, we summarize recent progresses on emerging application nanotechnology mitochondria‐targeted tumor treatment. We first...

10.1002/ange.202409351 article EN Angewandte Chemie 2024-06-14

Abstract Amplified ATP imaging in inflammatory cells is highly desirable. However, the spatial selectivity of current amplification methods limited, that is, signal performed systemically and not a disease site‐specific manner. Here we present versatile strategy, termed enzymatically triggerable, aptamer‐based (ETA‐SA), enables cell‐specific through spatially‐resolved amplification. The ETA‐SA leverages translocated enzyme to activate DNA aptamer probes further drive cascade reactions...

10.1002/ange.202217551 article EN Angewandte Chemie 2023-02-08

Benefiting from specific target recognition by antibodies, the immunoassay is one of widely used assays for detection biologically and environmentally important small molecules in broad fields. It can be challenge to isolate their antibody complex an immobilization-free with separation small-molecule targets. Here we present mediated a triply functional DNA probe. A strand dually labeled fluorophore molecule. This probe integrates three functions, including binding antibody, signal reporting...

10.1021/acs.analchem.0c05386 article EN Analytical Chemistry 2021-03-14

Abstract Tracking spatial and temporal dynamics of bioactive molecules such as enzymes responding to therapeutic treatment is highly important for understanding the related functions. However, in situ molecular imaging at subcellular level during photodynamic therapy (PDT) has been hampered by limitations existing methods. Herein, we present a multifunctional nanoplatform (termed UR‐HAPT) that able simultaneously monitor human apurinic/apyrimidinic endonuclease 1 (APE1) near‐infrared (NIR)...

10.1002/ange.202203238 article EN Angewandte Chemie 2022-04-12

Abstract Despite significant progress in DNA self‐assembly for interfacing with biology, spatiotemporally controlled regulation of biological process via situ dynamic assembly remains an outstanding challenge. Here, we report optically triggered and disassembly strategy that enables on‐demand activation termination the cyclic GMP‐AMP synthase (cGAS)‐stimulator interferon genes (STING) signaling pathway. In design, activatable hairpin is engineered a photocleavable group at defined site to...

10.1002/ange.202305837 article EN Angewandte Chemie 2023-06-27

Comprehensive Summary Sensitive and specific imaging of tumor‐associated biomarkers offers an effective way for cancer diagnosis. However, most the reported probes are limited to targeting a single biomarker, which may impair precision. Here, we report aptamer‐based, AND‐gate DNA nanodevice that relies on sequential processing two proteins produce fluorescent signal precise tumor imaging. The integrates AS1411 aptamer bind cell surface nucleolin sensor respond intracellular...

10.1002/cjoc.202200836 article EN Chinese Journal of Chemistry 2023-03-08

Undissociated binding of SSB to single-stranded DNA facilitates fast gel-free capillary electrophoresis analysis fundamentally important strand exchange reactions.

10.1039/d0cc02844d article EN Chemical Communications 2020-01-01

Affinity Capillary Electrophoresis (ACE) is a useful analytical tool to study noncovalent interactions. However, it remains challenging for ACE measure weak and unstable interactions due the fast dissociation of binding complex possible destruction by high electric field. In this study, we proposed two-direction migration strategy that enables detect but important decreasing distance controlling opposite direction free probe. By synthesizing polyacrylamide-coated neutral capillary,...

10.1039/d0ay01515f article EN Analytical Methods 2020-01-01

Abstract Despite advances in the controlled reconfiguration of DNA structures for biological applications, dearth strategies that allow orthogonal regulation immune pathways remains a challenge. Here, we report first time an endogenous and exogenous tandem‐regulated assembly strategy enables orthogonally stimulation cyclic GMP‐AMP synthase (cGAS)‐stimulator interferon genes (STING) pathway. A motif containing two palindromic sequences is engineered with abasic site (AP)‐connected blocking...

10.1002/ange.202417916 article EN Angewandte Chemie 2024-11-11

The recombinase RecA/Rad51 ATPase family proteins catalyze paramount DNA strand exchange reactions that are critically involved in maintaining genome integrity. However, it remains unclear how proceeds when encountering RecA-free defects nucleoprotein filaments. Herein, by designing a series of unique substrates (e.g. truncated or conjugated incoming single-stranded DNA, and extended donor double-stranded DNA) developing two-color alternating excitation-modified single-molecule real-time...

10.1093/nar/gkad078 article EN cc-by-nc Nucleic Acids Research 2023-02-20

Abstract Despite advances in the controlled reconfiguration of DNA structures for biological applications, dearth strategies that allow orthogonal regulation immune pathways remains a challenge. Here, we report first time an endogenous and exogenous tandem‐regulated assembly strategy enables orthogonally stimulation cyclic GMP‐AMP synthase (cGAS)‐stimulator interferon genes (STING) pathway. A motif containing two palindromic sequences is engineered with abasic site (AP)‐connected blocking...

10.1002/anie.202417916 article EN Angewandte Chemie International Edition 2024-11-11
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