Swagata Adhikary

ORCID: 0000-0003-2470-8356
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About
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Research Areas
  • Mitochondrial Function and Pathology
  • Ubiquitin and proteasome pathways
  • ATP Synthase and ATPases Research
  • Cancer, Hypoxia, and Metabolism
  • Photosynthetic Processes and Mechanisms
  • Microbial Metabolic Engineering and Bioproduction
  • Fungal and yeast genetics research
  • Enzyme Catalysis and Immobilization

Institute for Stem Cell Biology and Regenerative Medicine
2022-2025

Augusta University
2023-2024

Manipal Academy of Higher Education
2022-2024

Mitochondria are dynamic organelles that constantly change morphology. What controls mitochondrial morphology however remains unresolved. Using actively respiring yeast cells growing in distinct carbon sources, we find and activity unrelated. Cells can exhibit fragmented or networked different nutrient environments independent of activity. Instead, is controlled by the intracellular redox state, which itself depends on nature electron entry into transport chain (ETC)—through complex I/II...

10.1073/pnas.2421953122 article EN cc-by-nc-nd Proceedings of the National Academy of Sciences 2025-04-17

Many cells in high glucose repress mitochondrial respiration, as observed the Crabtree and Warburg effects. Our understanding of biochemical constraints for activation is limited. Using a Saccharomyces cerevisiae screen, we identified conserved deubiquitinase Ubp3 (Usp10), necessary repression. mutants have increased activity despite abundant glucose, along with decreased glycolytic enzymes, rewired metabolic network trehalose production. Utilizing ∆ubp3 cells, orthogonal approaches,...

10.7554/elife.90293.4 article EN cc-by eLife 2024-09-26

Cells contain disparate amounts of distinct amino acids, each which has different metabolic and chemical origins, but the supply cost vs demand requirements is unclear. Here, using yeast we quantify restoration-responses after disrupting acid supply, uncover a hierarchically prioritized restoration strategy for acids. We comprehensively calculate individual biosynthetic costs, total an acid, estimate cumulative supply/demand acid. Through this, discover that priority driven by gross itself...

10.1038/s41467-024-51769-w article EN cc-by-nc-nd Nature Communications 2024-08-23

Many cells in high glucose repress mitochondrial respiration, as observed the Crabtree and Warburg effects. Our understanding of biochemical constraints for activation is limited. Using a Saccharomyces cerevisiae screen, we identified conserved deubiquitinase Ubp3 (Usp10), necessary repression. mutants have increased activity despite abundant glucose, along with decreased glycolytic enzymes, rewired metabolic network trehalose production. Utilizing ∆ubp3 cells, orthogonal approaches,...

10.7554/elife.90293 article EN cc-by eLife 2023-11-03

Many cells in high glucose repress mitochondrial respiration, as observed the Crabtree and Warburg effects. Our understanding of biochemical constraints for activation is limited. Using a Saccharomyces cerevisiae screen, we identified conserved deubiquitinase Ubp3 (Usp10), necessary repression. mutants have increased activity despite abundant glucose, along with decreased glycolytic enzymes, rewired metabolic network trehalose production. Utilizing Δubp3 cells, orthogonal approaches,...

10.7554/elife.90293.2 preprint EN 2024-03-12

Abstract Mitochondria are dynamic organelles that constantly change morphology. What controls mitochondrial morphology however remains unresolved. Using actively respiring yeast cells growing in distinct carbon sources, we find and activity unrelated. Cells can exhibit fragmented or networked different nutrient environments independent of activity. Instead, is controlled by the intracellular redox state, which itself depends on nature electron entry into Electron Transport Chain (ETC)—...

10.1101/2024.08.05.606562 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-08-05

Many cells in high glucose repress mitochondrial respiration, as observed the Crabtree and Warburg effects. Our understanding of biochemical constraints for activation is limited. Using a Saccharomyces cerevisiae screen, we identified conserved deubiquitinase Ubp3 (Usp10), necessary repression. mutants have increased activity despite abundant glucose, along with decreased glycolytic enzymes, rewired metabolic network trehalose production. Utilizing Δubp3 cells, orthogonal approaches,...

10.7554/elife.90293.3 preprint EN 2024-08-29

Abstract Many cells in high glucose repress mitochondrial respiration, as observed the Crabtree and Warburg effects. Our understanding of biochemical constraints for activation is limited. Using a Saccharomyces cerevisiae screen, we identified conserved deubiquitinase Ubp3 (Usp10), necessary repression. mutants have increased activity despite abundant glucose, along with decreased glycolytic enzymes, rewired metabolic network trehalose production. Utilizing Δubp3 cells, orthogonal...

10.1101/2022.12.29.522272 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2022-12-30

Abstract Cells require disparate amounts of distinct amino acids, which themselves have discrete biosynthetic costs. However, it remains unclear if and how cells respond differently to their scarcity. To explore this, we re-organized acids into groups based on metabolic origins. Subsequently, using yeast assessed responses transient disruptions in acid supply, uncover diverse restoration for acids. hierarchically prioritize restoring glutamate-, sulfur-, pentose-phosphate- pyruvate-derived...

10.1101/2023.07.31.551408 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-08-02

Many cells in high glucose repress mitochondrial respiration, as observed the Crabtree and Warburg effects. Our understanding of biochemical constraints for activation is limited. Using a Saccharomyces cerevisiae screen, we identified conserved deubiquitinase Ubp3 (Usp10), necessary repression. mutants have increased activity despite abundant glucose, along with decreased glycolytic enzymes, rewired metabolic network trehalose production. Utilizing Δubp3 cells, orthogonal approaches,...

10.7554/elife.90293.1 preprint EN 2023-11-03
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