Oscar E. A. Arce

ORCID: 0000-0003-2603-1940
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About
Contact & Profiles
Research Areas
  • Computational Drug Discovery Methods
  • interferon and immune responses
  • Protein Structure and Dynamics
  • SARS-CoV-2 and COVID-19 Research
  • Animal Virus Infections Studies
  • Enzyme Structure and Function
  • Biochemical and Molecular Research
  • Tuberculosis Research and Epidemiology
  • vaccines and immunoinformatics approaches
  • Plant biochemistry and biosynthesis

Universidade Federal do Rio Grande
2022-2025

Oleksandra Herasymenko Madhushika Silva Abd Al‐Aziz A. Abu‐Saleh Ayaz Ahmad Jesus Antonio Alvarado-Huayhuaz and 95 more Oscar E. A. Arce Roly J. Armstrong C.H. Arrowsmith Kelly E. R. Bachta Hartmut Beck Dénes Berta M. Bieniek Vincent Blay Albina Bolotokova Philip E. Bourne Marco Breznik Peter J. Brown Aaron D. G. Campbell Emanuele Carosati Irene Chau Daniel J. Cole Ben Cree Wim Dehaen Katrin Denzinger Karina Machado Ian Dunn Prasannavenkatesh Durai Kristina Edfeldt A.M. Edwards Darren Fayne Kallie Friston Pegah Ghiabi Elisa Gibson Judith Guenther Anders Gunnarsson Alexander Hillisch Douglas R. Houston Jan H. Jensen Rachel Harding Claire L. Harris Laurent Hoffer Anders Hogner Joshua T. Horton Scott Houliston Judd F. Hultquist Ashley Hutchinson John J. Irwin Marko Jukič Shubhangi Kandwal Andrea Karlova V.L. Katis Ryan P. Kich Dmitri Kireev David Ryan Koes Nicole L. Inniss Uta Lessel Sijie Liu P. Loppnau Wei Lu Sam Alexander Martino Miles McGibbon Jens Meiler Akhila Mettu Sam Money-Kyrle Rocco Moretti Yurii S. Moroz Charuvaka Muvva J.A. Newman Leon Obendorf Brooks Paige Amit Pandit Keunwan Park Sumera Perveen Rachael Pirie Gennady Poda M. V. Protopopov Vera Pütter Federico Ricci Natalie J. Roper Edina Rosta Margarita Rzhetskaya Yogesh Sabnis K.J.F. Satchell Frederico Schmitt Kremer Thomas W. Scott Almagul Seitova Casper Steinmann Valerij Talagayev Olga O. Tarkhanova Natalie J. Tatum Dakota Treleaven Adriano Velasque Werhli W. Patrick Walters Xiaowen Wang Jude Wells Geoffrey Wells Yvonne Westermaier Gerhard Wolber Lars Wortmann Jixian Zhang

A critical assessment of computational hit finding experiments (CACHE) challenge was conducted to predict ligands for the SARS-CoV-2 Nsp13 helicase RNA binding site, a highly conserved COVID-19 target. Twenty-three participating teams comprised chemists and data scientists used protein structure from fragment-screening paired with advanced machine learning methods each up 100 inhibitory ligands. Across all teams, 1957 compounds were predicted subsequently procured commercial catalogs...

10.26434/chemrxiv-2025-8f0rq preprint EN cc-by 2025-03-04
Oleksandra Herasymenko Madhushika Silva Abd Al‐Aziz A. Abu‐Saleh Ayaz Ahmad Jesus Antonio Alvarado-Huayhuaz and 95 more Oscar E. A. Arce Roly J. Armstrong C. Arrowsmith Kelly E. R. Bachta Hartmut Beck Dénes Berta M. Bieniek Vincent Blay Albina Bolotokova Philip E. Bourne Marco Breznik Peter J. Brown Aaron D. G. Campbell Emanuele Carosati Irene Chau Daniel J. Cole Ben Cree Wim Dehaen Katrin Denzinger Karina Machado Ian Dunn Prasannavenkatesh Durai Kristina Edfeldt A.M. Edwards Darren Fayne Kallie Friston Pegah Ghiabi Elisa Gibson Judith Günther Anders Gunnarsson Alexander Hillisch Douglas R. Houston Jan H. Jensen Rachel Harding Claire L. Harris Laurent Hoffer Anders Hogner Joshua T. Horton Scott Houliston Judd F. Hultquist Ashley Hutchinson John J. Irwin Marko Jukič Shubhangi Kandwal Andrea Karlova V.L. Katis Ryan P. Kich Dmitri Kireev David Ryan Koes Nicole L. Inniss Uta Lessel Sijie Liu P. Loppnau Wei Lu Sam Alexander Martino Miles McGibbon Jens Meiler Akhila Mettu Sam Money-Kyrle Rocco Moretti Yurii S. Moroz Charuvaka Muvva J.A. Newman Leon Obendorf Brooks Paige Amit Pandit Keunwan Park Sumera Perveen Rachael Pirie Gennady Poda M. V. Protopopov Vera Pütter Federico Ricci Natalie J. Roper Edina Rosta Margarita Rzhetskaya Yogesh Sabnis K.J.F. Satchell Frederico Schmitt Kremer T. W. Scott Almagul Seitova Casper Steinmann Valerij Talagayev Olga O. Tarkhanova Natalie J. Tatum Dakota Treleaven Adriano Velasque Werhli W. Patrick Walters Xiaowen Wang Jude Wells Geoffrey Wells Yvonne Westermaier Gerhard Wolber Lars Wortmann Jixian Zhang

A critical assessment of computational hit finding experiments (CACHE) challenge was conducted to predict ligands for the SARS-CoV-2 Nsp13 helicase RNA binding site, a highly conserved COVID-19 target. Twenty-three participating teams comprised chemists and data scientists used protein structure from fragment-screening paired with advanced machine learning methods each up 100 inhibitory ligands. Across all teams, 1957 compounds were predicted subsequently procured commercial catalogs...

10.26434/chemrxiv-2025-8f0rq-v2 preprint EN cc-by 2025-03-05
Oleksandra Herasymenko Madhushika Silva Abd Al‐Aziz A. Abu‐Saleh Ayaz Ahmad Jesus Antonio Alvarado-Huayhuaz and 95 more Oscar E. A. Arce Roly J. Armstrong C. Arrowsmith Kelly E. R. Bachta Hartmut Beck Dénes Berta M. Bieniek Vincent Blay Albina Bolotokova Philip E. Bourne Marco Breznik Peter J. Brown Aaron D. G. Campbell Emanuele Carosati Irene Chau Daniel J. Cole Ben Cree Wim Dehaen Katrin Denzinger Karina Machado Ian Dunn Prasannavenkatesh Durai Kristina Edfeldt A.M. Edwards Darren Fayne Kallie Friston Pegah Ghiabi Elisa Gibson Judith Günther Anders Gunnarsson Alexander Hillisch Douglas R. Houston Jan H. Jensen Rachel Harding Claire L. Harris Laurent Hoffer Anders Hogner Joshua T. Horton Scott Houliston Judd F. Hultquist Ashley Hutchinson John J. Irwin Marko Jukič Shubhangi Kandwal Andrea Karlova V.L. Katis Ryan P. Kich Dmitri Kireev David Ryan Koes Nicole L. Inniss Uta Lessel Sijie Liu P. Loppnau Wei Lu Sam Alexander Martino Miles McGibbon Jens Meiler Akhila Mettu Sam Money-Kyrle Rocco Moretti Yurii S. Moroz Charuvaka Muvva J.A. Newman Leon Obendorf Brooks Paige Amit Pandit Keunwan Park Sumera Perveen Rachael Pirie Gennady Poda M. V. Protopopov Vera Pütter Federico Ricci Natalie J. Roper Edina Rosta Margarita Rzhetskaya Yogesh Sabnis K.J.F. Satchell Frederico Schmitt Kremer T. W. Scott Almagul Seitova Casper Steinmann Valerij Talagayev Olga O. Tarkhanova Natalie J. Tatum Dakota Treleaven Adriano Velasque Werhli W. Patrick Walters Xiaowen Wang Jude Wells Geoffrey Wells Yvonne Westermaier Gerhard Wolber Lars Wortmann Jixian Zhang

A critical assessment of computational hit finding experiments (CACHE) challenge was conducted to predict ligands for the SARS-CoV-2 Nsp13 helicase RNA binding site, a highly conserved COVID-19 target. Twenty-three participating teams comprised chemists and data scientists used protein structure from fragment-screening paired with advanced machine learning methods each up 100 inhibitory ligands. Across all teams, 1957 compounds were predicted subsequently procured commercial catalogs...

10.26434/chemrxiv-2025-8f0rq-v3 preprint EN cc-by 2025-03-06
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