A5005649820- Genetics, Bioinformatics, and Biomedical Research
- Genomics and Phylogenetic Studies
- Enzyme Structure and Function
- Protein Structure and Dynamics
- Microbial Community Ecology and Physiology
- Biomedical Text Mining and Ontologies
- Computational Drug Discovery Methods
- Genetic diversity and population structure
- Microbial Fuel Cells and Bioremediation
- Machine Learning in Bioinformatics
- Anaerobic Digestion and Biogas Production
Kerala Agricultural University
2021-2022
Noorul Islam University
2017-2019
T.K.M. College of Arts and Science
2017
Hindustan Petroleum Corporation Limited (India)
2016
ABSTRACT CFSSP (Chou & Fasman Secondary Structure Prediction Server) is an online protein secondary structure prediction server. This server predicts regions of from the sequence such as alpha helix, beta sheet, and turns amino acid sequence. The output predicted also displayed in linear sequential graphical view based on probability occurrence turns. method implemented Chou-Fasman algorithm, which analyses relative frequencies each helices, sheets, known structures solved with X-ray...
NCBI BLAST is a most popular bioinformatics framework for finding local similarity between two or more biological sequences. It provides integrative access to various databases through web user interface, command-line and application programming interface. BLASTphp lightweight PHP library that wrap’s BLAST’s RESTful API into custom graphical interface BLAST. The program remotely executes the HTTP/HTTPS elicits response in HTML, XML, XML2, JSON2, Text, Tabular (plain) format. However, it can...
Abstract Background NCBI BLAST is a most popularly used sequence analysis platform in broad range of applications. The final release standalone WWW server (wwwBLAST v2.2.26) was officially released on May 10, 2004, and discontinued its support. Due to the popularity high demand, algorithms were refined with rich features as online BLAST, BLAST+, RESTful service, cloud server. loc v2.0 lightweight PHP library, designed preference It masks command-line BLAST+ programs graphical user interface...
xmlBLASTparser is a lightweight PHP library for parsing an XML formatted output of NCBI BLAST sequence alignment and rendering into attractive web page. The biological database accession numbers present in each hit have properly hyperlinked to the original source. Moreover, ids description summary anchor corresponding section. can be easily embedded or integrated page at server-side through standalone software RESTful service BLAST. has same flavour online freely available under terms GNU...
Background: Protein Data Bank (PDB) is the most popular structure database that contains experimentally determined three-dimensional (3D) structures of biological macromolecules and small molecules. The rich features PDB are keyword assisted advanced text search, search by sequence alignment, motif ligand to target-ligand complex through SMILES substructure JSON API query quality assessment, genome viewer, 3D viewer. It widely used in molecular modelling computer-aided drug design. PDBcle a...