Shuai Du

ORCID: 0000-0003-2910-8499
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About
Contact & Profiles
Research Areas
  • Pharmaceutical and Antibiotic Environmental Impacts
  • Microbial Community Ecology and Physiology
  • Bacteriophages and microbial interactions
  • Soil Carbon and Nitrogen Dynamics
  • Gut microbiota and health
  • Plant Virus Research Studies
  • Environmental DNA in Biodiversity Studies
  • Plant and Fungal Interactions Research
  • Wastewater Treatment and Nitrogen Removal
  • Advanced biosensing and bioanalysis techniques
  • Mycorrhizal Fungi and Plant Interactions
  • Antibiotic Resistance in Bacteria
  • Microplastics and Plastic Pollution
  • Insect Utilization and Effects
  • Ethics in Clinical Research
  • Plant Ecology and Soil Science
  • Insect symbiosis and bacterial influences
  • Viral gastroenteritis research and epidemiology
  • Nematode management and characterization studies
  • Protist diversity and phylogeny
  • Animal Virus Infections Studies
  • DNA and Nucleic Acid Chemistry
  • Pesticide and Herbicide Environmental Studies
  • Evolution and Genetic Dynamics
  • Mercury impact and mitigation studies

Chinese Academy of Sciences
2016-2024

Institute of Urban Environment
2023-2024

Research Center for Eco-Environmental Sciences
2016-2024

Huazhong Agricultural University
2021-2023

Fujian Normal University
2022

University of Chinese Academy of Sciences
2019-2020

Beihua University
2018

Microplastic (MP) pollution is a rapidly growing global environmental concern that has led to the emergence of new compartment, plastisphere, which hotspot for accumulation antibiotic resistance genes (ARGs) and human bacterial pathogens (HBPs). However, studies on effects long-term organic fertilizer application dispersal ARGs virulence factor (VFGs) in plastisphere farmland soil have been limited. Here, we performed field culture experiment by burying nylon bags filled with MPs paddy had...

10.1016/j.envint.2024.108431 article EN cc-by-nc-nd Environment International 2024-01-01

Little is known about the global distribution and environmental drivers of key microbial functional traits such as antibiotic resistance genes (ARGs). Soils are one Earth's largest reservoirs ARGs, which integral for soil competition, have potential implications plant human health. Yet, their diversity patterns remain poorly described. Here, we analyzed 285 ARGs in soils from 1012 sites across all continents created first atlas with distributions topsoil ARGs.

10.1186/s40168-022-01405-w article EN cc-by Microbiome 2022-12-12

Soil-borne fungal phytopathogens are important threats to soil and crop health. However, their community composition environmental determinants remain unclear. Here, we explored the effects of agricultural fertilization regime (i.e., organic material application) on phytopathogens, using data sets from a combination field survey long-term experiment. We found that carbon was key factor affected diversity relative abundance in soils. The dominant genera including

10.1128/msystems.01337-21 article EN mSystems 2022-03-21

Earthworms are critical in regulating soil processes and act as filters for antibiotic resistance genes (ARGs). Yet, the geographic patterns main drivers of earthworm gut ARGs remain largely unknown. We collected 52 samples from arable forest ecosystems along a 3000 km transect across China, analyzing diversity abundance using shotgun metagenomics. Earthworm guts harbored lower compared to soil, resulting stronger distance-decay rate gut. Greater deterministic assembly were found than soil....

10.1021/acs.est.4c03812 article EN Environmental Science & Technology 2024-07-22

Viruses are the most abundant biological entities on planet and drive biogeochemical cycling a global scale. Our understanding of biogeography soil viruses their ecological functions lags significantly behind that Bacteria Fungi. Here, viromic approach was used to investigate distribution from 19 soils across China.

10.1186/s40793-022-00401-9 article EN cc-by Environmental Microbiome 2022-02-07

Soil pollution is an important stressor affecting biodiversity and ecosystem functioning. However, we lack a holistic understanding of how soil microbial communities respond to heavy metal in agricultural ecosystems. Here, explored the distribution patterns inter-kingdom interactions entire microbiome (including bacteria, fungi, protists) 47 paired paddy upland fields along gradient legacy mercury (Hg) pollution. We found that richness composition protistan community had stronger responses...

10.1038/s43705-022-00156-x article EN cc-by ISME Communications 2022-08-09

Livestock wastes contain high levels of antibiotic resistance genes (ARGs) and a variety human-related pathogens. Bioconversion livestock manure using larvae the beetle Protaetia brevitarsis is an effective technique for waste reduction value creation; however, fate ARGs during gut passage interaction with microbiome P. remains unclear. To investigate this, we fed dry chicken 6 days measured bacterial community dynamics ARG abundance diversity along tract high-throughput quantitative PCR...

10.1128/msystems.00529-22 article EN cc-by mSystems 2022-08-08

Rice-crayfish co-culture (RC) has been widely and rapidly promoted as a sustainable agricultural system in many countries. The accumulation of crayfish residues could enhance soil organic matters; however, impacts this integrated farming model on the dissemination pathogenicity resistance virulence genes remain poorly understood. Here, we characterized antibiotic (ARGs), biocide (BRGs), metal (MRGs) factor (VFGs) using metagenomic methods paired RC rice monoculture (RM) systems across China....

10.1016/j.envint.2023.107789 article EN cc-by Environment International 2023-01-30

Primary succession of plant and microbial communities in the glacier retreating foreland has been extensively studied, but shifts antibiotic resistance genes (ARGs) with due to global warming remain elusive. Unraveling diversity features ARGs pristine soil during could contribute a mechanistic understanding evolution development resistome. In this study, we quantified abundance along 50-year chronosequence by using high-throughput quantitative PCR (HT-qPCR) technique. A total 24 two mobile...

10.3389/fmicb.2019.01569 article EN cc-by Frontiers in Microbiology 2019-07-09
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