Phoebe Valdes

ORCID: 0000-0003-3165-7235
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About
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Research Areas
  • Alzheimer's disease research and treatments
  • Pluripotent Stem Cells Research
  • Epigenetics and DNA Methylation
  • Fetal and Pediatric Neurological Disorders
  • Genetic and Kidney Cyst Diseases
  • Bioinformatics and Genomic Networks
  • Protist diversity and phylogeny
  • Genetic Mapping and Diversity in Plants and Animals
  • Genomic variations and chromosomal abnormalities
  • Nuclear Receptors and Signaling
  • 14-3-3 protein interactions
  • Cancer-related molecular mechanisms research
  • Genomics and Rare Diseases
  • Computational Drug Discovery Methods

University of California, San Diego
2020-2025

La Jolla Bioengineering Institute
2023-2024

Moores Cancer Center
2020

Phoebe Valdes Andrew B. Caldwell Qing Liu Michael Q. Fitzgerald Srinivasan Ramachandran and 95 more Celeste M. Karch Sarah Adams Ricardo Allegri Aki Araki Nicolas R. Barthélemy Randall J. Bateman Jacob Bechara Tammie L.S. Benzinger Sarah Berman Courtney Bodge Susan E. Brandon W. K. Brooks Jared R. Brosch Jill Buck Virginia Buckles Kathleen Carter Lisa Cash Charlie Chen Jasmeer P. Chhatwal Patricio Chrem Méndez Jasmin Chua Helena Chui Laura Courtney Carlos Cruchaga Gregory S. Day Chrismary DeLaCruz Darcy Denner Anna Diffenbacher Aylin Dincer Tamara Donahue J. Maxwell Douglas Duc M. Duong Noelia Egido Bianca Esposito Anne M. Fagan Marty Farlow Becca Feldman Colleen Fitzpatrick Shaney Flores Nick C. Fox Erin Franklin Nelly Joseph‐Mathurin Hisako Fujii Samantha L. Gardener Bernardino Ghetti Alison Goate Sarah B. Goldberg Jill Goldman Alyssa Gonzalez Brian Gordon Susanne Gräber‐Sultan Neill R. Graff‐Radford Morgan Graham Julia Gray Emily Gremminger Miguel L. Grilo Alex Groves Christian Haass Lisa M. Häsler Jason Hassenstab Cortaiga Hellm Elizabeth Herries Laura Hoechst-Swisher Anna Hofmann David M. Holtzman Russ C. Hornbeck Yakushev Igor Ryoko Ihara Takeshi Ikeuchi Snežana Ikonomović Kenji Ishii Clifford R. Jack Gina Jerome Erik C. B. Johnson Mathias Jucker Stephan Käser Kensaku Kasuga Sarah Keefe William E. Klunk Robert A. Koeppe Deb Koudelis Elke Kuder-Buletta Christoph Laske Allan I. Levey Johannes Levin Yan Li Oscar L. López Jacob Marsh Ralph N. Martins Neal Scott Mason Colin L. Masters Kwasi G. Mawuenyega Austin McCullough Eric McDade Arlene Mejia

Abstract Background PSEN1, PSEN2, and APP mutations cause Alzheimer’s disease (AD) with an early age at onset (AAO) progressive cognitive decline. PSEN1 are more common generally have earlier AAO; however, certain a later AAO, similar to those observed in PSEN2 . Methods We examined whether endotypes exist across these AAO (~ 55 years) using hiPSC-derived neurons from familial (FAD) patients harboring A79V , N141I V717I mechanistically characterized by integrating RNA-seq ATAC-seq. Results...

10.1186/s13195-024-01659-6 article EN cc-by Alzheimer s Research & Therapy 2025-01-04

Development of neural circuitry depends on the integration signaling pathways to coordinate specification, proliferation and differentiation cell types in right number, place, at time. Zinc finger protein 423 (Zfp423), a 30-zinc transcription factor, forms alternate complexes with components several developmental pathways, suggesting it as point signal during brain development. We previously showed that mice lacking Zfp423 have reduced cerebellar precursor cells, resulting complete loss...

10.1093/hmg/ddr300 article EN Human Molecular Genetics 2011-07-05

<title>Abstract</title> Background Mutations in PSEN1, PSEN2, and APP can lead to Alzheimer’s disease (AD) with an early age at onset (AAO) hallmark progressive cognitive decline. These mutations are highly penetrant. Although PSEN1 more common usually have earlier AAO, certain cause a later similar PSEN2 mutations. We sought determine whether endotypes exist across these relatively late AAO. Methods generated hiPSC-derived neurons from patients harboring autosomal-dominant, familial (FAD)...

10.21203/rs.3.rs-2356131/v1 preprint EN cc-by Research Square (Research Square) 2022-12-09

Abstract Background Early‐onset Alzheimer’s disease (EOAD) is a complex that occurs at an early age onset (AAO) before 65 years, constituting 5‐6% of all AD cases and remains poorly understood. Patient‐derived induced pluripotent stem cells (iPSCs) have been used to model different forms EOAD display heterogeneous mechanisms. Method We examined iPSC‐derived neurons from both familial harboring mutations in PSEN1 A79V , PSEN2 N141I APP V717I non‐familial patients AAO. RNA‐seq for as well...

10.1002/alz.094681 article EN cc-by Alzheimer s & Dementia 2024-12-01

ABSTRACT Zfp423 encodes a transcriptional regulatory protein that interacts with canonical signaling and lineage pathways. Mutations in mouse or its human ortholog ZNF423 are associated range of developmental abnormalities reminiscent ciliopathies, including cerebellar vermis hypoplasia other midline brain defects. Null mice have reduced viability most strain backgrounds. Here we show complete lethality on C57BL/6J background, dominant rescue backcrosses to any 13 partner strains,...

10.1101/2020.05.12.091629 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2020-05-13

Abstract Zfp423 encodes a transcriptional regulatory protein that interacts with canonical signaling and lineage pathways. Mutations in mouse or its human ortholog ZNF423 are associated range of developmental abnormalities reminiscent ciliopathies, including cerebellar vermis hypoplasia other midline brain defects. Null mice have reduced viability most strain backgrounds. Here we show complete lethality on C57BL/6J background, dominant rescue backcrosses to any 13 partner strains,...

10.1534/g3.120.401720 article EN cc-by G3 Genes Genomes Genetics 2020-09-24

Abstract Non-familial Alzheimer’s disease (AD) occurring before 65 years of age is commonly referred to as early-onset (EOAD) and constitutes ~ 5–6% all AD cases (Mendez et al. in Continuum 25:34–51, 2019). While EOAD exhibits the same clinicopathological changes such amyloid plaques, neurofibrillary tangles (NFTs), brain atrophy, cognitive decline (Sirkis Mol Psychiatry 27:2674–88, 2022; Caldwell Brain 15:83, 2022) observed more prevalent late-onset (LOAD), patients tend have severe...

10.1186/s13041-023-01063-5 article EN cc-by Molecular Brain 2023-11-03
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