Adree Khondker

ORCID: 0000-0003-3246-4662
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About
Contact & Profiles
Research Areas
  • Pediatric Urology and Nephrology Studies
  • Urological Disorders and Treatments
  • Lipid Membrane Structure and Behavior
  • Urinary Bladder and Prostate Research
  • Urinary Tract Infections Management
  • Artificial Intelligence in Healthcare and Education
  • Antibiotic Resistance in Bacteria
  • Renal cell carcinoma treatment
  • Alzheimer's disease research and treatments
  • Prostate Cancer Treatment and Research
  • Antibiotics Pharmacokinetics and Efficacy
  • Prostate Cancer Diagnosis and Treatment
  • Autopsy Techniques and Outcomes
  • Renal and Vascular Pathologies
  • Urologic and reproductive health conditions
  • Diversity and Career in Medicine
  • Cardiac, Anesthesia and Surgical Outcomes
  • Erythrocyte Function and Pathophysiology
  • Genital Health and Disease
  • Pelvic floor disorders treatments
  • Bladder and Urothelial Cancer Treatments
  • Ureteral procedures and complications
  • Cellular transport and secretion
  • Parkinson's Disease Mechanisms and Treatments
  • Machine Learning in Healthcare

University of Toronto
2020-2025

Hospital for Sick Children
2021-2025

SickKids Foundation
2022-2025

Canada Research Chairs
2025

University of New Brunswick
2025

University Health Network
2023

Oxfam
2023

Liechtenstein Institute
2023

John Wiley & Sons (United States)
2023

Urological Society of Australia and New Zealand
2023

Atomic resolution map of the soluble amyloid beta assembly (Aβ<sub>n</sub>) “toxic surfaces” that facilitate early pathogenic events in Alzheimer's disease (AD).

10.1039/c9sc01331h article EN cc-by Chemical Science 2019-01-01

Abstract With the advent of polymyxin B (PmB) resistance in bacteria, mechanisms for mcr -1 are crucial importance design novel therapeutics. The phenotype is known to decrease membrane charge and increase packing by modification bacterial outer membrane. We used X-ray diffraction, Molecular Dynamics simulations, electrochemistry, leakage assays determine location PmB different membranes assess damage. By varying lipid tail independently, we show that increasing surface promotes penetration...

10.1038/s42003-019-0297-6 article EN cc-by Communications Biology 2019-02-18

Signaling events at membranes are often mediated by membrane lipid composition or physical properties. These properties could act either favoring the binding of downstream effectors modulating their activity. Several proteins can sense/generate curvature (i.e. shape). However, modulation activity enzymes a membrane's shape has not yet been reported. Here, using cell-free assay with purified diacylglycerol kinase ɛ (DGKɛ) and liposomes, we studied acyl-chain specificity an enzyme...

10.1074/jbc.ra118.005293 article EN cc-by Journal of Biological Chemistry 2018-09-20

In the brain, α-synuclein (aSN) partitions between free unbound cytosolic and membrane bound forms modulating both its physiological pathological role complicating study due to structural heterogeneity. Here, we use an interdisciplinary, synergistic approach characterize properties of aSN:lipid mixtures, isolated co-structures, aSN in mammalian cells. Enabled by isolation membrane-bound state, show that within previously described N-terminal anchor, interaction relies on tail (NTT) head...

10.1096/fj.202000107r article EN cc-by-nc The FASEB Journal 2020-04-11

Amyloid- β aggregates play a causative role in Alzheimer's disease. These are product of the physical environment provided by basic neuronal membrane, composed lipid bilayer. The intrinsic properties bilayer allow amyloid- peptides to nucleate and form well-ordered cross- sheets within membrane. Here, we correlate aggregation hydrophobic fragment protein, A 25 - 35 , with hydrophobicity, fluidity, charge density We summarize recent biophysical studies model membranes relate these process...

10.3390/membranes7030049 article EN cc-by Membranes 2017-08-31

As more artificial intelligence (AI) applications are integrated into healthcare, there is an urgent need for standardization and quality-control measures to ensure a safe successful transition of these novel tools clinical practice. We describe the role silent trial, which evaluates AI model on prospective patients in real-time, while end-users (i.e., clinicians) blinded predictions such that they do not influence decision-making. present our experience evaluating previously developed...

10.3389/fdgth.2022.929508 article EN cc-by Frontiers in Digital Health 2022-08-16

Exposure to research data and artificial intelligence (AI) model predictions may lead many sources of bias in clinical decision-making evaluation. These include anchoring bias, automation leakage. In this case study, we introduce a new source termed "induced belief revision," which have discovered through our experience developing testing an AI predict obstructive hydronephrosis children based on their renal ultrasounds. After silent trial model, observed unintentional but clinically...

10.1056/aics2300004 article EN NEJM AI 2024-01-16

Objective To compare the outcomes of pre‐ vs postnatally diagnosed posterior urethral valves (PUV) at two large paediatric centres in North America to ascertain if prenatal diagnosis PUV is associated with better outcomes. Patients and Methods All boys were identified institutions between 2000 2020 (The Hospital for Sick Children [SickKids, SK] Children’s Philadelphia [CHOP]). Baseline characteristics outcome measures compared those postnatally. Main interest included progression chronic...

10.1111/bju.15708 article EN BJU International 2022-02-10

Caffeine partitions in lipid membranes the head to tail interface and leads a thickening defluidification.

10.1039/c6cp08104e article EN Physical Chemistry Chemical Physics 2017-01-01

Alpha synuclein (αS) oligomers are a key component of Lewy bodies implicated in Parkinson's disease (PD). Although primarily intracellular, extracellular αS exocytosed from neurons also contributes to PD pathogenesis through prion-like transmission mechanism. Here, we show at progressive degrees resolution that the most abundantly expressed protein, human serum albumin (HSA), inhibits oligomer (αSn) toxicity three-pronged First, endogenous HSA targets αSn with sub-μM affinity via...

10.1021/jacs.0c01894 article EN Journal of the American Chemical Society 2020-05-08

No AccessJournal of UrologyPediatric Urology1 Dec 2022Multi-institutional Validation Improved Vesicoureteral Reflux Assessment With Simple and Machine Learning ApproachesThis article is commented on by the following:Editorial Comment Adree Khondker, Jethro C. Kwong, Priyank Yadav, Justin Y. H. Chan, Anuradha Singh, Marta Skreta, Lauren Erdman, Daniel T. Keefe, Katherine Fischer, Gregory Tasian, Jessica Hannick, Frank Papanikolaou, Benjamin J. Cooper, Christopher S. Mandy Rickard, Armando...

10.1097/ju.0000000000002987 article EN The Journal of Urology 2022-10-10
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