David A. Evans

ORCID: 0000-0003-4059-4416
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About
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Research Areas
  • Natural Language Processing Techniques
  • Topic Modeling
  • Semantic Web and Ontologies
  • Music History and Culture
  • Biomedical Text Mining and Ontologies
  • Advanced Text Analysis Techniques
  • Protein Structure and Dynamics
  • Cardiac, Anesthesia and Surgical Outcomes
  • Text and Document Classification Technologies
  • Information Retrieval and Search Behavior
  • Spectroscopy and Quantum Chemical Studies
  • Theater, Performance, and Music History
  • Algorithms and Data Compression
  • Race, History, and American Society
  • Speech and dialogue systems
  • Web Data Mining and Analysis
  • Ferroelectric and Piezoelectric Materials
  • Advanced Chemical Physics Studies
  • Molecular Junctions and Nanostructures
  • Data Management and Algorithms
  • American Sports and Literature
  • Multi-Agent Systems and Negotiation
  • Health Policy Implementation Science
  • Military History and Strategy
  • Community Health and Development

Google (United Kingdom)
2024

DeepMind (United Kingdom)
2024

Simon Fraser University
2022-2023

Macquarie University
2022

Queensland Theological College
2022

East Lancashire Hospitals NHS Trust
2016-2021

Kalamazoo College
1976-2017

Purdue University West Lafayette
2016

University of Bristol
2015

Griffith University
2012-2014

Abstract The introduction of AlphaFold 2 1 has spurred a revolution in modelling the structure proteins and their interactions, enabling huge range applications protein design 2–6 . Here we describe our 3 model with substantially updated diffusion-based architecture that is capable predicting joint complexes including proteins, nucleic acids, small molecules, ions modified residues. new demonstrates improved accuracy over many previous specialized tools: far greater for protein–ligand...

10.1038/s41586-024-07487-w article EN cc-by Nature 2024-05-08

Silicon micromachining and thin-film technology were used to fabricate iridium stimulating arrays which can be excite discrete volumes of the central nervous system. multichannel probes with thicknesses ranging from 1 40 mu m arbitrary two-dimensional shape fabricated using a high-yield, circuit-compatible process. Iridium sites are shown have similar characteristics wire electrodes. Accelerated pulse testing over eight million 100 A biphasic current pulses on 8000 m/sup 2/ demonstrated...

10.1109/10.32101 article EN IEEE Transactions on Biomedical Engineering 1989-07-01

Demonstrating nonclassical effects over longer and distances is essential for both quantum technology fundamental science. The main challenge loss of photons during propagation, because considering only those cases where are detected opens a "detection loophole" in security whenever parties or devices untrusted. Einstein-Podolsky-Rosen (EPR) steering equivalent to an entanglement-verification task which one party (device) We derive arbitrarily loss-tolerant tests, enabling us perform...

10.1103/physrevx.2.031003 article EN cc-by Physical Review X 2012-07-18

The Canon Group is an informal organization of medical informatics researchers who are working on the problem developing a "deeper" representation formalism for use in exchanging data and applications. Individuals group represent experts such areas as knowledge computational linguistics, well variety subdisciplines. All share view that current mechanisms characterization phenomena either inadequate (limited or rigid) idiosyncratic (useful specific application but incapable being generalized...

10.1136/jamia.1994.95236153 article EN Journal of the American Medical Informatics Association 1994-05-01

Summary Pacific leatherback turtle Dermochelys coriacea populations have been declining precipitously. It has suggested that fishery‐associated mortality is the leading factor causing decline; however, sensitivity of leatherbacks to climate variability relative their population ecology unknown. We investigated effects interannual variability, as governed by El Niño Southern Oscillation (ENSO), on nesting ecology. used equatorial sea surface temperature (SST) anomaly data over various time...

10.1111/j.1365-2664.2007.01276.x article EN Journal of Applied Ecology 2007-02-28

A parallel searching algorithm based on eigenvector-following is used to generate databases of minima and transition states for an all-atom model the peptide Ac(ala)3NHMe a simplified bead protein. We analyze energy landscapes both systems using disconnectivity graphs upon potential free energy. This approach highlights role vibrational entropy in determining relative local minima. Thermodynamic properties calculated superposition are reasonable agreement with parallel-tempering Monte Carlo...

10.1063/1.1540099 article EN The Journal of Chemical Physics 2003-02-10

Information retrieval is an important application area of natural-language processing where one encounters the genuine challenge large quantities unrestricted text. This paper reports on a few simple, yet robust and efficient noun-phrase analysis techniques to create better indexing phrases for information retrieval. In particular, we describe hybrid approach extraction meaningful (continuous or discontinuous) subcompounds from complex noun using both corpus statistics linguistic heuristics....

10.3115/981863.981866 article EN 1996-01-01

The discrete path sampling technique is used to calculate folding pathways of the 16-amino acid beta hairpin-forming sequence from residues 41-56 B1 domain protein G. time obtained using master equation dynamics and kinetic Monte Carlo simulations, evolution different order parameters occupation probabilities groups minima are calculated characterize intermediates on pathway.

10.1063/1.1759317 article EN The Journal of Chemical Physics 2004-06-23

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTTheoretical studies of the oxy anionic substituent effectMichael L. Steigerwald, William A. Goddard III, and David EvansCite this: J. Am. Chem. Soc. 1979, 101, 8, 1994–1997Publication Date (Print):April 1, 1979Publication History Published online1 May 2002Published inissue 1 April 1979https://pubs.acs.org/doi/10.1021/ja00502a011https://doi.org/10.1021/ja00502a011research-articleACS PublicationsRequest reuse permissionsArticle...

10.1021/ja00502a011 article EN Journal of the American Chemical Society 1979-04-01

A combination of methods, including laser-induced fluorescence excitation, fluorescence-dip infrared (FDIR) spectroscopy, and UV-UV hole-burning have been used to study the ultraviolet spectra single conformations two methyl-capped dipeptides: N-acetyl tryptophan amide (NATA) methyl (NATMA). Density functional theory calculations predict that all low-energy conformers NATA NATMA belong one conformational families: C5, with its extended dipeptide backbone, or C7eq, in which backbone forms a...

10.1063/1.1521132 article EN The Journal of Chemical Physics 2002-12-02

Information retrieval is an important application area of natural-language processing where one encounters the genuine challenge large quantities unrestricted text. This paper reports on a few simple, yet robust and efficient noun-phrase analysis techniques to create better indexing phrases for information retrieval. In particular, we describe hybrid approach extraction meaningful (continuous or discontinuous) subcompounds from complex noun using both corpus statistics linguistic heuristics....

10.48550/arxiv.cmp-lg/9605019 preprint EN other-oa arXiv (Cornell University) 1996-01-01

From the Publisher: Biomedicine has become one of best-modeled domains from several perspectives - artificial intelligence, psychology, and social sciences; yet few studies have combined these points view. In this book, interdisciplinary strengths cognitive science offer fresh insights into biomedical problem solving. Cognitive Science in Medicine presents current research that focuses on issues results applying techniques to problems biomedicine. It includes material by researchers who...

10.7326/0003-4819-112-2-153_2 article EN Annals of Internal Medicine 1990-01-15

In this paper, planning models developed in artificial intelligence are applied to the kind of that must be carried out by participants a conversation. A mechanism is defined, and short fragment free‐flowing videotaped conversation described. The bulk paper then devoted an attempt understand terms mechanism. This microanalysis suggests ways which augmented, reveals several important conversational phenomena deserve further investigation.

10.1207/s15516709cog0404_2 article EN Cognitive Science 1980-10-01

Since its inception in the late 1950s, field of Information Retrieval (IR) has developed tools that help people find, organize, and analyze information. The key early influences on are well-known. Among them H. P. Luhn's pioneering work, development vector space retrieval model by Salton his students, Cleverdon's Cranfield experimental methodology, Spärck Jones' idf , a series probabilistic models Robertson Croft. Until WorldWideWeb (Web), IR was greatest interest to professional information...

10.1145/1328964.1328967 article EN ACM SIGIR Forum 2007-12-01
Miriam Schmidts Yuqing Hou Claudio R. Cortés Dorus A. Mans Céline Huber and 95 more Karsten Boldt Mitali Patel Jeroen van Reeuwijk Jean-Marc Plaza Sylvia E. C. van Beersum Zhi Min Yap Stef J.F. Letteboer S. Paige Taylor Warren Herridge Colin A. Johnson Peter Scambler Marius Ueffing Hülya Kayserili Deborah Krakow Stephen M. King Philip L. Beales Lihadh Al‐Gazali Carol Wicking Valérie Cormier‐Daire Ronald Roepman Hannah M. Mitchison George B. Witman Saeed Al-Turki Carl E. Anderson Richard Anney Dinu Antony Jennifer L. Asimit Muhammad Ayub J. M. Barrett Inês Barroso Jamie Bentham Shoumo Bhattacharya Douglas Blackwood Martin Bobrow Elena G. Bochukova Patrick Bolton Chris Boustred Gerome Breen Marie‐Jo Brion Andrew H. Brown Mattia Calissano Keren Carss Krishna Chatterjee Lu Chen Sebhattin Cirak Peter Clapham Gail Clement Guy Coates David Collier Catherine Cosgrove Tony Cox Nick Craddock Lucy Crooks Sarah Curran Allan Daly Petr Danecek George Davey Smith Aaron G. Day‐Williams Ian N.M. Day Richard Durbin Sarah Edkins Peter Ellis David A. Evans I. Sadaf Farooqi Ghazaleh Fatemifar David Fitzpatrick Paul Flicek Jamie Floyd A. Reghan Foley Chris Franklin Marta Futema Louise Gallagher Tom R. Gaunt Daniel H. Geschwind Celia M.T. Greenwood Detelina Grozeva Xiaosen Guo Hugh Gurling Deborah Hart Audrey E. Hendricks Peter Holmans Jie Huang Steve E. Humphries Matt Hurles Pirro G. Hysi David H. Jackson Yalda Jamshidi David Jewell J. Janse Chris J. F. Kaye Thomas Keane John P. Kemp Karen L. Kennedy Alastair Kent Anja Kolb‐Kokocinski

Abstract The analysis of individuals with ciliary chondrodysplasias can shed light on sensitive mechanisms controlling ciliogenesis and cell signalling that are essential to embryonic development survival. Here we identify TCTEX1D2 mutations causing Jeune asphyxiating thoracic dystrophy partially penetrant inheritance. Loss impairs retrograde intraflagellar transport (IFT) in humans the protist Chlamydomonas , accompanied by destabilization IFT dynein motor. We thus define as an integral...

10.1038/ncomms8074 article EN cc-by Nature Communications 2015-06-05

A parallel searching algorithm based on eigenvector-following is used to generate databases of minima and transition states for all-atom models Ac(ala)12NHMe Ac(ala)16NHMe. The AMBER95 force field Cornell et al. [J. Am. Chem. Soc. 117, 5179 (1995)] employed both with without a simple implicit solvent. We use master equation approach analyze the dynamics systems, relate results potential energy landscapes using disconnectivity graphs. low-lying regions are compared found be remarkably...

10.1063/1.1484389 article EN The Journal of Chemical Physics 2002-07-15

10.1080/10401338909539394 article EN Teaching and Learning in Medicine 1989-01-01

For the small peptide met-enkephalin in implicit aqueous solvent a connected database of potential energy minima and transition states is constructed refined based on kinetic criteria, using discrete path sampling method. A comparison this technique with parallel tempering Monte Carlo simulations shows that it produces satisfactory configuration space occupied at 298 K. The predicted to show folding transition, time scales for are obtained, along description significant intermediates.

10.1063/1.1616515 article EN The Journal of Chemical Physics 2003-10-31

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSamarium(III)-catalyzed hydroboration of olefins with catecholborane. A general approach to the synthesis boronate estersDavid A. Evans, Alexander R. Muci, and Rainer StuermerCite this: J. Org. Chem. 1993, 58, 20, 5307–5309Publication Date (Print):September 1, 1993Publication History Published online1 May 2002Published inissue 1 September 1993https://pubs.acs.org/doi/10.1021/jo00072a007https://doi.org/10.1021/jo00072a007research-articleACS...

10.1021/jo00072a007 article EN The Journal of Organic Chemistry 1993-09-01
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