A5033508315- Insect and Arachnid Ecology and Behavior
- Insect and Pesticide Research
- Plant and animal studies
- Genetic and phenotypic traits in livestock
- Genomics and Phylogenetic Studies
- Gut microbiota and health
- Identification and Quantification in Food
- Aquaculture disease management and microbiota
- Genetic Mapping and Diversity in Plants and Animals
- Species Distribution and Climate Change
- Machine Learning in Bioinformatics
- RNA Research and Splicing
- Aquaculture Nutrition and Growth
- Wine Industry and Tourism
- Cancer-related molecular mechanisms research
- Genetic diversity and population structure
- Marine and coastal ecosystems
- RNA and protein synthesis mechanisms
- Marine Biology and Ecology Research
- Salmonella and Campylobacter epidemiology
- Microbial Community Ecology and Physiology
- Molecular Biology Techniques and Applications
- Evolutionary Algorithms and Applications
University of Copenhagen
2023-2025
University of the Basque Country
2015-2025
The current large spectrum of sheep phenotypic diversity results from the combined product selection for different production traits such as wool, milk and meat, its natural adaptation to new environments. In this study, we scanned genome 25 Sasi Ardi 75 Latxa Western Pyrenees three types regions under selection: (1) underlying local semi-feral sheep, (2) related a long traditional dairy pressure in (3) experiencing specific effect modern genetic improvement program established breed during...
With numerous endemic subspecies representing four of its five evolutionary lineages, Europe holds a large fraction Apis mellifera genetic diversity. This diversity and the natural distribution range have been altered by anthropogenic factors. The conservation this heritage relies on availability accurate tools for diagnosis. Based pool-sequence data from 2145 worker bees 22 populations sampled across Europe, we employed two highly discriminative approaches (PCA FST) to select most...
Genome-resolved metagenomics, based on shotgun sequencing, has become a powerful strategy for investigating animal-associated bacterial communities, due its heightened capability delivering detailed taxonomic, phylogenetic, and functional insights compared to amplicon sequencing-based approaches. While genome-resolved metagenomics holds promise across various non-lethal sample types, their effectiveness in yielding high-quality metagenome-assembled genomes remains largely unexplored. Our...
Whole-genome sequencing has become routine for population genetic studies. Sequencing of individuals provides maximal data but is rather expensive and fewer samples can be studied. In contrast, a pool (pool-seq) provide sufficient data, while presenting less an economic challenge. Few studies have compared the two approaches to infer structure diversity in real datasets. Here, we apply individual (ind-seq) pool-seq study Western honey bees (
This article documents the public availability of (i) microbiomes in diet and gut larvae from dipteran Dilophus febrilis using massive parallel sequencing, (ii) SNP SSR discovery characterization transcriptome Atlantic mackerel (Scomber scombrus, L) (iii) assembled for an endangered, endemic Iberian cyprinid fish (Squalius pyrenaicus).
Tench (Tinca tinca L.) has great economic potential due to its high rate of fecundity and long-life span. Population genetic studies based on allozymes, microsatellites, PCR-RFLP sequence analysis genes DNA fragments have revealed the presence Eastern Western phylogroups. However, lack genomic resources for this species complicated development markers. In study, tench transcriptome genome were sequenced by high-throughput sequencing. A total 60,414 putative SNPs identified in using a...
Genome-resolved metagenomics, based on shotgun sequencing, has become a powerful strategy for investigating animal-associated microbiomes, due its heightened capability delivering detailed taxonomic, phylogenetic, and functional insights compared to amplicon sequencing-based approaches. While genome-resolved metagenomics holds promise across various non-lethal sample types, their effectiveness in yielding high-quality metagenome-assembled genomes (MAGs) remains largely unexplored. Our...
<title>Abstract</title> Genome-resolved metagenomics, based on shotgun sequencing, has become a powerful strategy for investigating animal-associated microbiomes, due its heightened capability delivering detailed taxonomic, phylogenetic, and functional insights compared to amplicon sequencing-based approaches. While genome-resolved metagenomics holds promise across various non-lethal sample types, their effectiveness in yielding high-quality metagenome-assembled genomes (MAGs) remains...
For population genetic studies in nonmodel organisms, it is important to use every single source of genomic information. This paper presents EXFI, a Python pipeline that predicts the splice graph and exon sequences using an assembled transcriptome raw whole-genome sequencing reads. The main algorithm uses Bloom filters remove reads are not part transcriptome, predict intron-exon boundaries, then proceed call exons from assembly, generate underlying graph. results returned GFA1 format, which...
European sardine or pilchard is a planktonic small pelagic fish present from the North Sea in Europe to coast of Senegal Africa, and across Mediterranean sea Black Sea. Ecologically, sardines are an intermediary link trophic network, preying on plankton being predated by larger fishes, marine mammals, seabirds. This species great nutritional economic value as cheap but rich source protein fat. It either consumed directly humans fed fishmeal for aquaculture farm animals. Despite its...
Context The influence of anthropogenic pressures on plankton communities in well-flushed estuaries has been overlooked. Owing to this ecosystem’s short water-residence time, they are foreseen be mainly composed microorganisms from neritic–oceanic sources, more resilient impacts. Aims This study characterises the bacterioplankton Urdaibai, a small-drainage estuary located at UNESCO biosphere reserve, unravel its annual dynamic and ecological status. Methods Amplicon sequencing was used assess...
<title>Abstract</title> Unravelling the colonisation dynamics and physiological effects of zoonotic bacteria such as <italic>Campylobacter</italic> is imperative to prevent foodborne diseases. We employed a hologenomic approach jointly analyse metabolic networks gene expression caecal microbiota, with intestinal 613 broiler chickens that did not undergo an opportunistic colonisation. report early development distinct microbial enterotype enriched <italic>Bacteroides fragilis_A</italic>,...