A5005009910- Species Distribution and Climate Change
- Research Data Management Practices
- Environmental DNA in Biodiversity Studies
- Scientific Computing and Data Management
- Genomics and Phylogenetic Studies
- Bacteriophages and microbial interactions
- Forest Ecology and Biodiversity Studies
- Biomedical Text Mining and Ontologies
- Plant and animal studies
- Protist diversity and phylogeny
- Geochemistry and Geologic Mapping
- Forest Insect Ecology and Management
- Ecology and Vegetation Dynamics Studies
- Lichen and fungal ecology
- Microbial Community Ecology and Physiology
- Graphite, nuclear technology, radiation studies
- Nuclear and radioactivity studies
- Nuclear reactor physics and engineering
Fondation Pour la Recherche Sur la Biodiversité
2022-2025
Institut de Recherche pour le Développement
2022-2025
Centre National de la Recherche Scientifique
2020-2025
Structure et Instabilité des Génomes
2022-2023
Metropolitan Hospital
2022
Université Paris 1 Panthéon-Sorbonne
2022
Office Français de la Biodiversité
2022
Sorbonne Université
2022
Ifremer
2022
Université Laval
2013
Abstract Numerous conceptual frameworks exist for best practices in research data and analysis (e.g., Open Science FAIR principles). In practice, there is a need further progress to improve transparency, reproducibility, confidence ecology. Here, we propose practical operational framework researchers experts ecology achieve building analytical procedures from individual projects production-level pipelines. We introduce the concept of atomization identify steps that support generalization by...
Marine biodiversity is facing unprecedented global changes due to the phenomenon known as “Blue Acceleration,” and addressing this issue a critical responsibility for human societies. Intertidal areas, particularly rocky shores, are especially vulnerable, they located at interface between land sea where experience multiple anthropogenic pressures in addition extreme variations natural conditions. These areas easily accessible, very frequented deeply rooted local culture. As such, present...
Numerous conceptual frameworks exist for good practices in research data and analysis (e.g. Open Science FAIR principles). In practice, there is a need further progress to improve transparency, reproducibility, confidence ecology. Here, we propose practical operational framework achieve building analytical procedures based on atomisation generalisation. We introduce the concept of identify steps which support generalisation by allowing us go beyond single analyses. These guidelines were...
The Biological Field Station of Paimpont (Station Biologique de Paimpont, SBP), owned by the University Rennes and located in Brocéliande Forest Brittany (France), has been hosting student scientific research field trips during last 60 years. study area SBP is a landscape mosaic 17 ha composed gorse moors, forests, prairies, ponds creeks. Land use evolved over time. Historical surveys students researchers focused on insects birds. With this study, we aimed to increase range taxa...
"FAIR (Findable, Accessible, Interoperable, Reusable) principles" (Wilkinson et al. 2016) and "open science" are two complementary movements in biodiversity science. Although we need to transition making scientific data associated material more FAIR, this does not necessarily imply open or source algorithms. Here, based on the experience of French Biodiversity Data Hub ("Pôle national de données Biodiversité" - PNDB), which is an e-infrastructure for by researchers, want showcase how...
Environmental DNA (eDNA) data enables biodiversity to be monitored at unprecedented resolution and scale. There is great potential in combining knowledge from traditional innovative methods such as eDNA for assessment. use cases are increasing aquatic marine environments, studies on soils have been developed recent years. PatriNat*1 (under the guardianship of French Biodiversity Office (OFB), National Museum Natural History (MNHN), Center Scientific Research (CNRS), Institute Development...
Le CEA s’est doté d’une compétence forte pour comprendre, modéliser et prévenir le risque hydrogène dans les installations nucléaires. À partir du milieu des années 1990, une approche couplée numérique expérimental a été mise en oeuvre atteindre ces objectifs : projet TONUS se doter d’outils numériques traiter de la distribution combustion l’hydrogène MISTRA alimenter modèles données expérimentales « CFD grade » l’efficacité moyens prévention. Ces connaissances outils ont conforté...
Data quality and documentation are at the core of FAIR (Findable, Accessible, Interoperable, Reusable) principles (Wilkinson et al. 2016). Regarding biodiversity more broadly ecology domains, complementary solutions well-known data standard (notably through Darwin Core (Wieczorek 2012)) orientation emerging from intensive use EML (Ecological Metadata Language (Michener 1997)) metadata standard. These notably capitalize on using: semantic annotation documents that describe attributes,...
The French national biodiversity data hub (“Pôle National de Données Biodiversité” - PNDB) is a e-infrastructure created in 2018 and led by the Museum of Natural History, contributing to Open Science policy Ministry Higher Education, Research Innovation (MESRI). PNDB contributes building an integrative framework taking into account over long term (from origins life future models), at all biological scales molecule socio-ecosystem), its interactions, providing tools services for description,...
Integration of biological data with different ecological scales is complex! The biodiversity community (scientists, policy makers, managers, citizen, NGOs) needs to build a framework harmonized and interoperable from raw, heterogeneous scattered datasets. Such will help observation, measurement understanding the spatio-temporal dynamic local global scales. One most relevant approaches reach that aim concept Essential Biodiversity Variables (EBV). As we can potentially extract lot information...