Thomas E. Videbæk

ORCID: 0000-0001-9158-2824
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About
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Research Areas
  • Theoretical and Computational Physics
  • Advanced biosensing and bioanalysis techniques
  • Modular Robots and Swarm Intelligence
  • Advanced Materials and Mechanics
  • Fluid Dynamics and Turbulent Flows
  • Supramolecular Self-Assembly in Materials
  • RNA Interference and Gene Delivery
  • Micro and Nano Robotics
  • Material Dynamics and Properties
  • Nonlinear Dynamics and Pattern Formation
  • Fluid Dynamics and Thin Films
  • Surfactants and Colloidal Systems
  • Electrostatics and Colloid Interactions
  • Gas Dynamics and Kinetic Theory
  • Adhesion, Friction, and Surface Interactions
  • DNA and Nucleic Acid Chemistry
  • nanoparticles nucleation surface interactions
  • Laser-Plasma Interactions and Diagnostics
  • Electrowetting and Microfluidic Technologies
  • Bacteriophages and microbial interactions
  • Photonic Crystals and Applications
  • Nanofabrication and Lithography Techniques
  • Pickering emulsions and particle stabilization
  • Language, Linguistics, Cultural Analysis
  • Characterization and Applications of Magnetic Nanoparticles

Brandeis University
2022-2025

Fermi National Accelerator Laboratory
2019-2024

University of Chicago
2019-2024

Stony Brook University
2015

Self-assembly is one of the most promising strategies for making functional materials at nanoscale, yet new design principles self-limiting architectures, rather than spatially unlimited periodic lattice structures, are needed. To address this challenge, we explore tradeoffs between addressable assembly and self-closing a specific class structures: cylindrical tubules. We make triangular subunits using DNA origami that have specific, valence-limited interactions designed binding angles,...

10.1073/pnas.2207902119 article EN cc-by-nc-nd Proceedings of the National Academy of Sciences 2022-10-17

Photonic crystals -- a class of materials whose optical properties derive from their structure in addition to composition can be created by self-assembling particles sizes are comparable the wavelengths visible light. Proof-of-principle studies have shown that DNA used guide self-assembly micrometer-sized colloidal into fully programmable crystal structures with photonic spectrum. However, extremely temperature-sensitive kinetics DNA-functionalized has frustrated attempts grow large,...

10.1038/s41467-023-39992-3 article EN cc-by Nature Communications 2023-07-15

Recent advances enable the creation of nanoscale building blocks with complex geometries and interaction specificities for self-assembly. This nearly boundless design space necessitates principles defining mutual interactions between multiple particle species to target a user-specified structure or pattern. In this article, we develop symmetry-based method generate matrices that specify assembly two-dimensional tilings, which illustrate using equilateral triangles. By exploiting allowed 2D...

10.1021/acsnano.4c04515 article EN ACS Nano 2024-07-09

Programmable self-assembly has seen an explosion in the diversity of synthetic crystalline materials, but developing strategies that target "self-limiting" assemblies remained a challenge. Among these, self-closing structures, which local curvature defines finite global size, are prone to polymorphism due thermal bending fluctuations, problem worsens with increasing size. Here, we show assembly complexity can be used eliminate this source tubules. Using many distinct components, prune...

10.1126/sciadv.ado5979 article EN cc-by-nc Science Advances 2024-07-03

Over the last decade, field of programmable self-assembly has seen an explosion in diversity crystal lattices that can be synthesized from DNA-coated colloidal nanometer- and micrometer-scale particles. The prevailing wisdom been a particular structure targeted by designing DNA-mediated interactions, to enforce binding between specific particle pairs, diameters, control packing various species. In this article, we show other ubiquitous nonspecific interactions play equally important roles...

10.48550/arxiv.2501.02220 preprint EN arXiv (Cornell University) 2025-01-04

Programmable self-assembly has recently enabled the creation of complex structures through precise control interparticle interactions and particle geometries. Targeting ever more structurally complex, dynamic, functional assemblies necessitates going beyond design structure itself, to measurement local flexibility inter-subunit connections its impact on collective mechanics entire assembly. In this study, we demonstrate a method infer mechanical properties multisubunit using cryogenic...

10.48550/arxiv.2501.09230 preprint EN arXiv (Cornell University) 2025-01-15

Experiments have reached a monumental capacity for designing and synthesizing microscopic particles self-assembly, making it possible to precisely control particle concentrations, shapes, interactions. However, we lack comprehensive inverse-design framework tuning these particle-level attributes obtain desired system-level assembly outcomes, like the yield of user-specified target structure. This severely limits our ability take full advantage this vast design space assemble nanomaterials...

10.48550/arxiv.2501.16107 preprint EN arXiv (Cornell University) 2025-01-27

We present a modular DNA origami design approach to address the challenges of assembling geometrically complex nanoscale structures, including those with nonuniform Gaussian curvature. This features core structure that completely conserves scaffold routing across different designs and preserves more than 70% staples between designs, dramatically reducing both cost effort, while enabling precise independent programming subunit interactions binding angles through adjustable overhang lengths...

10.48550/arxiv.2502.05388 preprint EN arXiv (Cornell University) 2025-02-07

Over the last decade, field of programmable self-assembly has seen an explosion in diversity crystal lattices that can be synthesized from DNA-coated colloidal nanometer- and micrometer-scale particles....

10.1039/d5sm00001g article EN cc-by-nc Soft Matter 2025-01-01

Abstract The ability to design and synthesize ever more complicated colloidal particles opens the possibility of self-assembling a zoo complex structures, including those with one or self-limited length scales. An undesirable feature systems scales is that thermal fluctuations can lead assembly nearby, off-target states. We investigate strategies for limiting by using multiple types subunits. Using simulations energetics calculations, we explore this concept considering tubules built from...

10.1088/1361-648x/ac47dd article EN cc-by Journal of Physics Condensed Matter 2022-01-04

Viscous fingering patterns can form at the interface between two immiscible fluids confined in gap a pair of flat plates; whenever fluid with lower viscosity displaces one higher is unstable. For miscible situation more complicated due to formation interfacial structure thin dimension spanning gap. Here we study effect inherent diffusion on this and viscous that emerge. We discover an unexpected transition separating distinct regimes where pattern morphologies mode onset are different. This...

10.1103/physrevfluids.4.033902 article EN publisher-specific-oa Physical Review Fluids 2019-03-25

Cerenkov technology is often the optimal choice for particle identification in high energy collision applications. Typically, most challenging regime at pseudorapidity (forward) where must perform well laboratory momenta. For upcoming Electron Ion Collider (EIC), physics goals require hadron ($\pi$, K, p) up to $\sim$~50 GeV/c. In this region Ring-Imaging viable solution.\newline The speed of light a radiator medium inversely proportional refractive index. Hence, PID reaching out momenta...

10.1109/tns.2015.2487999 article EN IEEE Transactions on Nuclear Science 2015-12-01

The prevention of hydrodynamic instabilities can lead to important insights for understanding the instabilities' underlying dynamics. Rayleigh-Taylor instability that arises when a dense fluid sinks into and displaces lighter one is particularly difficult arrest. By preparing density inversion between two miscible fluids inside thin gap separating flat plates, we create clean initial stationary interface. Under these conditions, find suppressed below critical plate spacing. With increasing...

10.1126/sciadv.abd6605 article EN cc-by Science Advances 2020-11-19

The viscous fingering instability, which forms when a less-viscous fluid invades more-viscous one within confined geometry, is an iconic system for studying pattern formation. For both miscible and immiscible pairs the growth dynamics change after initial instability onset global structures, typical of late-time growth, are governed by viscosity ratio. Here we introduce experimental technique to measure flow throughout inner outer fluids. This probes existence new length scale associated...

10.1103/physrevfluids.9.053902 article EN cc-by Physical Review Fluids 2024-05-01

The viscous fingering instability, which forms when a less-viscous fluid invades more-viscous one within confined geometry, is an iconic system for studying pattern formation. For both miscible and immiscible pairs the growth dynamics change after initial instability onset global structures, typical of late-time growth, are governed by viscosity ratio. Here we introduce experimental technique to measure flow throughout inner outer fluids. This probes existence new length scale associated...

10.1103/physrevfluids.9.053902 preprint EN arXiv (Cornell University) 2024-02-02

Recent advances enable the creation of nanoscale building blocks with complex geometries and interaction specificities for self-assembly. This nearly boundless design space necessitates principles defining mutual interactions between multiple particle species to target a user-specified structure or pattern. In this article, we develop symmetry-based method generate matrices that specify assembly two-dimensional tilings which illustrate using equilateral triangles. By exploiting allowed 2D...

10.48550/arxiv.2403.19518 preprint EN arXiv (Cornell University) 2024-03-28

Attaching enzymes to nanostructures has proven useful the study of enzyme functionality under controlled conditions and led new technologies. Often, utility interest enzyme-tethered lie in how enzymatic activity is affected by are arranged space. Therefore, being able conjugate while preserving essential. In this paper, we present a method single-stranded DNA urease maintaining activity. We show evidence successful conjugation quantify variables that affect yield. also unchanged after...

10.48550/arxiv.2409.03040 preprint EN arXiv (Cornell University) 2024-09-04

Self-assembly of nanoscale synthetic subunits is a promising bottom-up strategy for fabrication functional materials. Here, we introduce design principle DNA origami nanoparticles 50-nm size, exploiting modularity, to make family versatile that can target an abundant variety self-assembled structures. The are based on core module remains constant among all the subunits. Variable bond modules and angle added exterior control interaction specificity, strength structural geometry. A series with...

10.48550/arxiv.2411.09801 preprint EN arXiv (Cornell University) 2024-11-14

A colorful technique allows us to better understand the development of branching patterns in fluid flow.

10.1063/pt.zork.luqw article EN Physics Today 2024-12-01

The binding properties of DNA-coated colloids are modified by growing new DNA domains on the particles’ surface using an isothermal polymerization reaction.

10.1039/d3sm01105d article EN cc-by Soft Matter 2023-01-01

The characteristic heavily branched patterns that result from viscous fingering instability are due to highly nonlinear growth of the fingers at late time. Here, existence an onset length scale associated with transition between linear and is revealed. Remarkably, by measuring this point, features form well into regime can be predicted. Existing theoretical work not sufficient understand scale, especially for miscible fluids where fluid structure within small gap becomes important.

10.1103/physrevfluids.5.123901 article EN Physical Review Fluids 2020-12-04

Self-assembly is one of the most promising strategies for making functional materials at nanoscale, yet new design principles self-limiting architectures, rather than spatially unlimited periodic lattice structures, are needed. To address this challenge, we explore trade-offs between addressable assembly and self-closing a specific class structures: cylindrical tubules. We make triangular subunits using DNA origami that have specific, valence-limited interactions designed binding angles,...

10.48550/arxiv.2203.01421 preprint EN other-oa arXiv (Cornell University) 2022-01-01
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