Kepa Ruiz‐Mirazo

ORCID: 0000-0002-0157-4394
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About
Contact & Profiles
Research Areas
  • Origins and Evolution of Life
  • Photoreceptor and optogenetics research
  • Protein Structure and Dynamics
  • Gene Regulatory Network Analysis
  • Plant and Biological Electrophysiology Studies
  • Evolutionary Game Theory and Cooperation
  • Microbial Metabolic Engineering and Bioproduction
  • Lipid Membrane Structure and Behavior
  • Photosynthetic Processes and Mechanisms
  • Philosophy and History of Science
  • Space Science and Extraterrestrial Life
  • Complex Systems and Decision Making
  • Earth Systems and Cosmic Evolution
  • Cognitive Science and Mapping
  • Bioinformatics and Genomic Networks
  • RNA Research and Splicing
  • Embodied and Extended Cognition
  • Social Representations and Identity
  • Evolution and Science Education
  • Slime Mold and Myxomycetes Research
  • Polyamine Metabolism and Applications
  • Evolution and Genetic Dynamics
  • Lipid metabolism and biosynthesis
  • Chaos, Complexity, and Education
  • Cellular Automata and Applications

Instituto Biofisika
2017-2024

Fundación Biofísica Bizkaia
2017-2024

University of the Basque Country
2013-2023

Centre National de la Recherche Scientifique
2023

Institut d'Histoire et de Philosophie des Sciences et des Techniques
2023

Université Paris 1 Panthéon-Sorbonne
2023

Consejo Superior de Investigaciones Científicas
2010-2019

Donostia International Physics Center
2014

Roma Tre University
2006

Centro de Astrobiología
2004

10.1023/b:orig.0000016440.53346.dc article EN Origins of Life and Evolution of Biospheres 2004-02-18

Fatty acids, hypothetical components of protocell membranes, are proved to enhance the prebiotic formation a hydrophobic peptide when organized in supramolecular assemblies.

10.1039/c5sc04796j article EN cc-by-nc Chemical Science 2016-01-01

This paper is a theoretical attempt to gain insight into the problem of how self-assembling vesicles (closed bilayer structures) could progressively turn minimal self-producing and self-reproducing cells, i.e. interesting candidates for (proto)biological systems. With this aim, we make use recently developed object-oriented platform carry out stochastic simulations chemical reaction networks that take place in dynamic cellular compartments. We apply new tool study behaviour different cell...

10.1098/rstb.2007.2071 article EN Philosophical Transactions of the Royal Society B Biological Sciences 2007-05-09

In previous works we have explored the dynamics of chemically reacting proto-cellular systems, under different experimental conditions and kinetic parameters, by means our stochastic simulation platform 'ENVIRONMENT'. this paper we, somehow, turn question around: accepting some broad modeling assumptions, investigate which simple protocells will spontaneously settle into a stationary reproducing regime, characterized regular growth/division cycle maintenance certain standard size chemical...

10.1039/c2ib20222k article EN Integrative Biology 2012-11-21

Abstract The origin-of-life problem has been traditionally conceived as the chemical challenge to find type of molecule and free-solution reaction dynamics that could have started Darwinian evolution. Different autocatalytic ‘self-replicative’ molecular species extensively investigated, together with plausible synthetic pathways might led, abiotically, such a minimalist scenario. However, in addition kinetics or evolutionary dynamics, other physical constraints (like compartmentalization,...

10.1038/s41598-017-02799-6 article EN cc-by Scientific Reports 2017-06-05

We studied the properties of bilayers formed by ether-and ester-containing phospholipids, whose hydrocarbon chains can be either linear or branched, using sn-1,2 dipalmitoyl, dihexadecyl, diphytanoyl, and diphytanyl phosphatidylcholines (DPPC, DHPC, DPhoPC, DPhPC, respectively) pure in binary mixtures. Differential scanning calorimetry confocal fluorescence microscopy giant unilamellar vesicles concurred showing that equimolar mixtures branched lipids gave rise to gel/fluid phase coexistence...

10.1016/j.bpj.2014.07.036 article EN publisher-specific-oa Biophysical Journal 2014-09-01

10.1007/s11084-010-9201-6 article EN Origins of Life and Evolution of Biospheres 2010-02-24

In addressing the origins of Darwinian evolution, recent experimental work has been focussed on discovery simple physical effects which would provide a relevant selective advantage to protocells competing with each other for limited supply lipid. particular, data coming from Szostak's lab suggest that transition prebiotically plausible lipid membranes more complex and heterogeneous ones, closer real biomembranes, may have driven by changes in fluidity membrane its affinity available...

10.1038/srep05675 article EN cc-by Scientific Reports 2014-07-14
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