A5061480932- Biomedical Text Mining and Ontologies
- Bioinformatics and Genomic Networks
- Advanced Proteomics Techniques and Applications
- Genomics and Phylogenetic Studies
- Genetics, Bioinformatics, and Biomedical Research
- Mass Spectrometry Techniques and Applications
- Microbial Metabolic Engineering and Bioproduction
- Advanced Database Systems and Queries
- Plant nutrient uptake and metabolism
- Service-Oriented Architecture and Web Services
- Plant Disease Resistance and Genetics
- Genetic Mapping and Diversity in Plants and Animals
- Metabolomics and Mass Spectrometry Studies
- Scientific Computing and Data Management
- Gene expression and cancer classification
- Advanced Biosensing Techniques and Applications
University of Bergen
2018-2023
Earlham Institute
2017
Norwich Research Park
2017
Mass spectrometry-based proteomics is a high-throughput technology generating ever-larger amounts of data per project. However, storing, processing, and interpreting these can be challenge. A key element in simplifying this process the development interactive frameworks focusing on visualization that greatly simplify both interpretation generation new knowledge. Here we present PeptideShaker Online, user-friendly web-based framework for identification mass data, from raw file conversion to...
<ns4:p>The Brassica Information Portal (BIP) is a centralised repository for phenotypic data. Trait data associated with research and breeding experiments conducted on crops, used as vegetables, livestock fodder biofuels, hosted the site, together information experimental plant materials used, well trial design. BIP an open access source project, built schema of CropStoreDB, such can provide trait management strategies any crop A new user interface programmatic submission/retrieval system...
<ns4:p>The Brassica Information Portal (BIP) is a centralised repository for brassica phenotypic data. The site hosts trait data associated with research and breeding experiments conducted on crops, that are used as oilseeds, vegetables, livestock forage fodder biofuels. A key feature the explicit management of meta-data describing provenance relationships between experimental plant materials, well trial design descriptors. BIP an open access source project, built schema CropStoreDB, such...
Abstract Background Mapping biomedical data to functional knowledge is an essential task in bioinformatics and can be achieved by querying identifiers (e.g., gene sets) pathway bases. However, the isoform posttranslational modification states of proteins are lost when converting input pathways into gene-centric lists. Findings Based on Reactome base, we built a network protein-protein interactions accounting for documented statuses proteins. We then implemented command line application...
The vast, uncoordinated proliferation of bioinformatics resources (databases, software tools, training materials etc.) makes it difficult for users to find them. To facilitate their discovery, various services are being developed collect such into registries. We have BioCIDER, which, rather like online shopping 'recommendations', provides a contextualization index help identify biological relevant the content sites in which is embedded.BioCIDER (www.biocider.org) an open-source platform....
Abstract Background Mapping biomedical data to functional knowledge is an essential task in bioinformatics and can be achieved by querying identifiers, e.g. gene sets, pathway knowledgebases. However, the isoform post-translational modification states of proteins are lost when converting input pathways into gene-centric lists. Findings Based on Reactome knowledgebase, we built a network protein-protein interactions accounting for documented statuses proteins. We then implemented command line...