Justin L Shumate

ORCID: 0000-0002-3223-0922
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About
Contact & Profiles
Research Areas
  • Cholesterol and Lipid Metabolism
  • Cellular transport and secretion
  • Lipoproteins and Cardiovascular Health
  • Retinal Development and Disorders
  • Plant Reproductive Biology
  • CRISPR and Genetic Engineering
  • RNA Interference and Gene Delivery
  • Diabetes, Cardiovascular Risks, and Lipoproteins
  • Cell Image Analysis Techniques
  • Toxin Mechanisms and Immunotoxins
  • Animal Genetics and Reproduction
  • Cancer, Lipids, and Metabolism
  • Cell death mechanisms and regulation
  • Drug Transport and Resistance Mechanisms

University of California, Berkeley
2024

Stanford University
2020-2022

Research Network (United States)
2022

Abstract Current approaches for inserting autonomous transgenes into the genome, such as CRISPR–Cas9 or virus-based strategies, have limitations including low efficiency and high risk of untargeted genome mutagenesis. Here, we describe precise RNA-mediated insertion (PRINT), an approach site-specifically primed reverse transcription that directs transgene synthesis directly at a multicopy safe-harbor locus. PRINT uses delivery two in vitro transcribed RNAs: messenger RNA encoding avian R2...

10.1038/s41587-024-02137-y article EN cc-by Nature Biotechnology 2024-02-20

Activating mutations in the leucine-rich repeat kinase 2 (LRRK2) cause Parkinson's disease, and previously we showed that activated LRRK2 phosphorylates a subset of Rab GTPases (Steger et al., 2017). Moreover, Golgi-associated Rab29 can recruit to surface Golgi activate it there for both auto- substrate phosphorylation. Here, define precise binding region Armadillo domain between residues 360-450 show this domain, termed 'site #1,' also bind additional substrates, Rab8A Rab10. identify...

10.7554/elife.79771 article EN cc-by eLife 2022-09-23

Transport of LDL-derived cholesterol from lysosomes into the cytoplasm requires NPC1 protein; NPC1L1 mediates uptake dietary cholesterol. We introduced single disulfide bonds and to explore importance inter-domain dynamics in transport. Using a sensitive method monitor lysosomal efflux, we found that NPC1's N-terminal domain need not release rest protein for efficient export. Either introducing constrain lumenal/extracellular domains or shortening cytoplasmic loop abolishes transport...

10.7554/elife.57089 article EN cc-by eLife 2020-05-14

Abstract Activating mutations in the Leucine Rich Repeat Kinase 2 (LRRK2) cause Parkinson’s disease and previously we showed that activated LRRK2 phosphorylates a subset of Rab GTPases (Steger et al., 2017). Moreover, Golgi-associated Rab29 can recruit to surface Golgi activate it there for both auto- substrate phosphorylation. Here define precise binding region Armadillo domain between residues 360-450 show this domain, termed “Site #1”, also bind additional substrates, Rab8A Rab10....

10.1101/2022.04.25.489459 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2022-04-25

Abstract Transport of LDL-derived cholesterol from lysosomes into the cytoplasm requires NPC1 protein; NPC1L1 mediates uptake dietary cholesterol. We introduced single disulfide bonds and to explore importance inter-domain dynamics in transport. Using a sensitive method monitor lysosomal efflux, we find that NPC1’s N-terminal domain need not release rest protein for efficient export. Either introducing constrain lumenal/extracellular domains or shortening cytoplasmic loop abolishes transport...

10.1101/2020.03.26.009217 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2020-03-29
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