A5067599857- Genomics and Phylogenetic Studies
- Plant Pathogens and Fungal Diseases
- Plant Disease Resistance and Genetics
- Microbial Natural Products and Biosynthesis
- Actinomycetales infections and treatment
- Microbial Community Ecology and Physiology
- Mycorrhizal Fungi and Plant Interactions
- Metal Extraction and Bioleaching
- Enzyme Production and Characterization
- Plant Pathogens and Resistance
- Aquaculture disease management and microbiota
- Infectious Diseases and Mycology
- Microbial Metabolism and Applications
- Bacteriophages and microbial interactions
- Pharmaceutical and Antibiotic Environmental Impacts
- Water Quality and Pollution Assessment
- Microbial Metabolic Engineering and Bioproduction
- Marine Sponges and Natural Products
- Plant-Microbe Interactions and Immunity
- Probiotics and Fermented Foods
- Identification and Quantification in Food
- Chromium effects and bioremediation
- Protist diversity and phylogeny
- Invertebrate Taxonomy and Ecology
- Biofuel production and bioconversion
Ondokuz Mayıs University
2015-2024
Eskişehir Osmangazi University
2011
Newcastle University
1996-1999
Abstract There is a need to clarify relationships within the actinobacterial genus Micromonospora , type of family Micromonosporaceae given its biotechnological and ecological importance. Here, draft genomes 40 strains two non-type are made available through Genomic Encyclopedia Bacteria Archaea project used generate phylogenomic tree which showed they could be assigned well supported phyletic lines that were not evident in corresponding trees based on single concatenated sequences conserved...
Five actinobacteria isolates, KC201T, KC401, KC310T, KC712T and 6K102T, were recovered from the Karakum Desert during an investigation of novel with biotechnological potential. A polyphasic approach confirmed affiliation strains to genus Nonomuraea. The showed chemotaxonomic morphological properties consistent their classification in Furthermore, these clearly distinguished formed well supperted clades phylogenetic phylogenomic trees. Low ANI dDDH values distinguishing phenotypic between...
To determine the effect of environmental conditions on production extracellular lignocellulose-degrading enzymes by Streptomyces sp. F2621 and to assess potential use these in hydrolysis lignocellulose material.The enzymes, endoxylanase, endoglucanase peroxidase during growth basal salts-yeast extract medium containing different carbon sources a number parameters (e.g. concentrations, pH temperature) were investigated. The highest endoxylanase (22.41 U ml(-1)) (0.58 activities obtained after...
A novel actinobacterial strain, designated 13K301T, was isolated from a soil sample collected the Karakum Desert, Turkmenistan. The taxonomic position of strain 13K301T revealed by using polyphasic approach. On basis 16S rRNA gene sequence analysis, belongs to genus Streptomyces and had highest similarity 'Streptomyces qaidamensis' S10T (99.2 %), flavovariabilis NRRL B-16367T (98.9 %) phaeoluteigriseus DSM 41896T (98.8 but formed distinct clade in phylogenetic tree. DNA-DNA relatedness...
A polyphasic taxonomic study was undertaken to clarify relationships within and between representative thermophilic alkalitolerant streptomycetes isolated from soil appropriate marker strains. The resultant data, notably those DNA–DNA relatedness studies, support the integrity of validly described species Streptomyces thermodiastaticus, thermoviolaceus thermovulgaris. However, genotypic phenotypic data clearly show that thermonitrificans Desai Dhala 1967 S. thermovulgaris ( Henssen 1957 )...
Almost complete sequences of the 16S rRNA genes eight representative thermophilic streptomycetes were determined following isolation and cloning amplified genes. These aligned with those mesophilic streptomycetes, phylogenetic trees inferred by using four tree-making algorithms. The formed two distinct clades that supported high bootstrap values based on 1,000 resamplings. One clade encompassed Streptomyces macrosporus related species, second included thermodiastaticus allied taxa....
A novel halotolerant actinomycete, designated strain BNT52(T), was isolated from soil collected Cihanbeyli Salt Mine in the central Anatolia region of Turkey, and examined using a polyphasic taxonomic approach. The isolate found to have chemical morphological properties typical genus Amycolatopsis formed distinct phyletic line 16S rRNA gene tree. Strain BNT52(T) most closely related nigrescens CSC17Ta-90(T) (96.7 %), magusensis KT2025(T) (96.6 sulphurea DSM 46092(T) dongchuanensis YIM...
The taxonomic positions of two novel actinomycetes, designated strains BNT558 T and SM3501 , were established by using a polyphasic approach. organisms had chemical morphological features that consistent with their classification in the genus Streptomyces . whole-cell hydrolysates contained ll -diaminopimelic acid as diagnostic diamino acid. predominant menaquinones MK-9(H 6 ) 8 for strain Major fatty acids anteiso-C 15 : 0 17 iso-C 16 polar lipid profile diphosphatidylglycerol,...
A novel actinobacterium, strain S1412(T), was isolated from a deep sediment sample, collected the southern Black Sea coast of Turkey, and examined using polyphasic approach. The organism had chemical morphological features typical genus Streptomyces. cell wall contained ll-diaminopimelic acid. Whole-cell hydrolysates galactose, glucose traces xylose. polar lipid profile S1412(T) consisted predominant compound diphosphatidylglycerol, moderate amounts phosphatidylethanolamine...
A reddish-orange-pigmented, Gram-stain-negative, aerobic, facultatively methylotrophic strain, N4211 T , isolated from arid soil, collected Abuja, Nigeria, was analysed by using a polyphasic approach. Phylogenetic analysis, based on 16S rRNA gene sequences, showed that strain belonged to the genus Methylobacterium . Strain most closely related aquaticum GR16 (98.56 %), platani PMB02 (97.95 %) and variabile GR3 (97.2 phylogenetic similarities all other species of with validly published names...
A novel actinomycete, strain DS3030 T , was isolated from a deep sediment sample, collected the southern Black Sea coast, Turkey, and examined using polyphasic approach. On basis of 16S rRNA gene sequence analysis, shown to belong genus Saccharomonospora be related most closely marina XMU15 (99.6 % similarity). Sequence similarities with other strains were lower than 97.0 %. The organism had chemical morphological features typical . cell wall contained meso -diaminopimelic acid, arabinose...
Two actinobacterial isolates, strains SG15T and SGB14T, were recovered through a microbial diversity study of nitrogen fixing nodules from Pisum sativum plants collected in Salamanca (Spain). The taxonomic status these isolates was determined using polyphasic approach both presented chemotaxonomic morphological properties consistent with their classification the genus Micromonospora . For highest 16S rRNA gene sequence similarities observed coxensis JCM 13248T (99.2 %) purpureochromogenes...
The taxonomic positions of four novel actinomycetes isolated from soil samples, designated KT2142T, PM2084T, K236T and A4038T, were established by using a polyphasic approach. organisms had chemical morphological features that consistent with their classification in the genus Pseudonocardia. Whole-cell hydrolysates strains contained meso-diaminopimelic acid arabinose galactose as diagnostic sugars (cell-wall type IV). Their predominant menaquinone was found to be MK-8(H4). major fatty...
Aims: To study the relationship between changes in composition of outer membrane proteins and survival Salmonella typhimurium LT2 filtered autoclaved seawater containing Toluidine Blue (TB) dye as a photosensitizer. Methods Results: In samples exposed to TB excited by artificial visible light, total viable (TVC) respiring cell counts (RCC) showed that, although TVC declined an undetectable level 6·5 h, RCC that some cells were still capable respiration. The porin protein changed gradually...
The taxonomic positions of two thermophilic actinomycetes isolated from soil were established in a polyphasic study. organisms shown to have phenotypic properties typical members the genus Amycolatopsis and formed distinct phyletic line methanolica 16S rDNA subclade. They also had many common genomic species that was closely related to, albeit from, type strain A. methanolica. A range distinguished isolates representatives all validly described Amycolatopsis. Genotypic data show strains...
The taxonomic position of two soil actinomycetes, strains A2012(T) and A2019(T), isolated from Turkish soils, was determined using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that the belonged to family Nocardiaceae. Strains A2019(T) were most closely related Nocardia caishijiensis DSM 44831(T) (98.9 %) mexicana CIP 108295(T) (98.6 %), respectively; similarity other type genus ranged 96.9 97.9 %. However, DNA-DNA relatedness phenotypic data demonstrated could be...