A5042134752- Plant Pathogenic Bacteria Studies
- Plant-Microbe Interactions and Immunity
- Semantic Web and Ontologies
- Biomedical Text Mining and Ontologies
- Banana Cultivation and Research
- Research Data Management Practices
- Plant Pathogens and Fungal Diseases
- Wheat and Barley Genetics and Pathology
- Plant Disease Resistance and Genetics
- Mycorrhizal Fungi and Plant Interactions
- Legume Nitrogen Fixing Symbiosis
- Genetic Mapping and Diversity in Plants and Animals
- Plant pathogens and resistance mechanisms
- Toxin Mechanisms and Immunotoxins
- Service-Oriented Architecture and Web Services
- Agriculture, Soil, Plant Science
- Fermentation and Sensory Analysis
- Scientific Computing and Data Management
- Crop Yield and Soil Fertility
- Insect Pest Control Strategies
- Rice Cultivation and Yield Improvement
- Bioeconomy and Sustainability Development
- Garlic and Onion Studies
- Plant Virus Research Studies
- Plant Pathogens and Resistance
Centro Internacional de Mejoramiento de Maíz Y Trigo
2009-2022
Kangwon National University
2005-2008
Tribhuvan University
2007
Institute of Agriculture and Animal Science
1996
The Plant Ontology (PO; http://www.plantontology.org/) is a publicly available, collaborative effort to develop and maintain controlled, structured vocabulary ('ontology') of terms describe plant anatomy, morphology the stages development. goals PO are link (annotate) gene expression phenotype data structures development, using model adopted by Gene Ontology. From its original design covering only rice, maize Arabidopsis, scope has been expanded include all green plants. was first...
The Crop Ontology (CO) of the Generation Challenge Program (GCP) (http://cropontology.org/) is developed for Integrated Breeding Platform (IBP) (http://www.integratedbreeding.net/) by several centers Consultative Group on International Agricultural Research (CGIAR): bioversity, CIMMYT, CIP, ICRISAT, IITA, and IRRI. breeding necessitates that breeders access genotypic phenotypic data related to a given trait. CO provides validated trait names used crop communities practice (CoP) harmonizing...
Abstract Fusarium ear rot (FER) incited by verticillioides is a major disease of maize that reduces grain quality globally. Host resistance the most suitable strategy for managing disease. We report results genome-wide association study (GWAS) to detect alleles associated with increased FER in set 818 tropical inbred lines evaluated three environments. Association tests performed using 43,424 single-nucleotide polymorphic (SNPs) markers identified 45 SNPs and 15 haplotypes were significantly...
Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture agrifood systems requires quality labeling or annotation in order to be interoperable. As recommended the FAIR principles, data, labels, metadata must use controlled vocabularies ontologies that are popular knowledge domain commonly used community. Despite existence of robust Life Sciences, there is currently no comprehensive full set for across agricultural disciplines. In this paper, we discuss...
Agricultural crop databases maintained in gene banks of the Consultative Group on International Research (CGIAR) are valuable sources information for breeders. These provide comparative phenotypic and genotypic that can help elucidate functional aspects plant agricultural biology. To facilitate data sharing within between these retrieval information, ontology (CO) database was designed to controlled vocabulary sets several economically important species.Existing public ontologies equivalent...
Ontology engineering and knowledge modeling for the plant sciences is expected to contribute understanding of basis traits that determine phenotypic expression in a given environment. Several crop- or clade-specific trait ontologies have been developed describe important agriculture order address major scientific challenges such as food security. We present three successful species and/or which needs crop scientists quickly access wide range related data, but their scope limits...
In this article, we present a joint effort of the wheat research community, along with data and ontology experts, to develop interoperability guidelines. Interoperability is ability two or more systems devices cooperate exchange data, interpret that shared information. growing concern scientific agriculture in general, as need deluge obtained through high-throughput technologies grows. Agreeing on common formats, metadata, vocabulary standards an important step obtain required level order...
Wheat is the most important staple crop in Afghanistan and accounts for main part of cereal production. However, wheat production has been unstable during last decades country depends on seed imports. research emphasized releases new, high-yielding disease resistant varieties but rates adoption improved are uncertain. We applied DNA fingerprinting to assess grown farmers' fields four Afghan provinces.Of 560 samples collected from 2015-16 cropping season, 74% were identified as released after...
Bacterial strains were isolated from diseased samples of shoot blight collected different pear growing orchards Chuncheon, Korea 1995 to 1998. Forty-nine showed their pathogenicity on immature fruit and pear. Microbiological, physiological, biochemical tests performed these pathogenic strains. One strain, designated as WT3 in this study, was selected a representative strain it the first outbreak area Jichonri, Chuncheon 1995. Further detailed characterization done by PCR amplification using...
In this comparative study, the effects of temperature, pH, and bactericides on growth Erwinia pyrifoliae amylovora were investigated. The maximum temperature for both species was estimated to be <TEX>$36{\circ}C$</TEX>. specific rates E. observed at <TEX>$27{\circ}C$</TEX> <TEX>$28{\circ}C$</TEX>, respectively, no significant differences shown their optimum temperatures. However, lower temperatures ranging from 12-<TEX>$21{\circ}C$</TEX>, showed higher with doubling times shorter than those...
<ns3:p>In this article, we present a joint effort of the wheat research community, along with data and ontology experts, to develop interoperability guidelines. Interoperability is ability two or more systems devices cooperate exchange data, interpret that shared information. growing concern scientific agriculture in general, as need deluge obtained through high-throughput technologies grows. Agreeing on common formats, metadata, vocabulary standards an important step obtain required level...
A sensitive and specific assay was developed to detect potato blackleg caused by Pectobacterium atrosepticum in potato. Primers PEAF PEAR from the Rhs family gene homologous RhsA (cell envelope biogenesis – outer membrane) were used amplify a 904 bp DNA fragment. PCR pathogen artificially inoculated seed tubers. The product only produced 12 isolates of P. various countries among 36 other species , Pseudomonas Xanthomonas as well Escherichia coli soilborne fungus Fusarium oxysporum f.sp. dianthi .
Twenty‐five strains of Erwinia pyrifoliae were investigated for their plasmid profiles and genetic relatedness. Four types profile observed the first time, suggesting intraspecific diversity in E. . Moreover, BOX‐PCR phylogenetic analysis based on 16S‐23S intergenic transcribed spacer (ITS) region showed variations among strains, although all clustered one group separated from amylovora On other hand, ERIC‐PCR partial groEL gene sequences revealed close relatedness strains. Amplification...
The disease-specific (dsp) region and the hypersensitive response pathogenicity (hrp) genes, including hrpW, hrpNEp, hrpC operons have previously been sequenced in Erwinia pyrifoliae WT3 [Shrestha et al. (2005a)]. In this study, remaining hrp hrpC, hrpA, hrpS, hrpXY, hrpL hrpJ operons, were determined. genes cluster (ca. 38 kb) was comprised of eight transcriptional units contained nine hrc (hrp conserved) genes. genetic organization hrp/hrc their orientation for transcriptions also similar...
Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture agrifood systems requires quality labelling to be interoperable. As recommended the FAIR principles, data, labels metadata must use controlled vocabularies ontologies that are popular in knowledge domain commonly used community. Despite existence of robust Life Sciences, there is currently no agreed full set for annotation across agricultural disciplines, which may span genetics, environment,...
The tar spot complex (TSC) is a devastating disease of maize ( Zea mays L.), occurring in 17 countries throughout Central, South, and North America the Caribbean, can cause grain yield losses up to 80%. As from continue intensify Central America, Phyllachora maydis , one causal pathogens TSC, was first detected United States 2015, 2020 Ontario, Canada. Both distribution due TSC are increasing, there critical need identify genetic resources for resistance. Seeds Discovery Initiative at CIMMYT...
Summary. A survey of rice fields during the main growing seasons in 81 locations from 21 districts Southern Terai region Nepal indicated that tungro was primarily restricted to Hardinath (Janakpur) and Parwanipur (Bara) regions. The incidence ranged 17% 51% 6% 61% causing about 89% grain yield loss Hardinath. Both bacilliform badnavirus (RTBV) spherical picornavirus (RTSV) were found isolates collected Parwanipur. These transmitted by Nephotettix virescens leaf extracts reacted antisera...
Abstract The Generation Challenge Programme (GCP – "http://www.generationcp.org":http://www.generationcp.org) is a globally distributed crop research consortium directed toward improvement through the application of comparative biology and genetic resources characterization to plant breeding. GCP adopted development paradigm ‘model-driven architecture’ achieve interoperability integration diverse data types that are available sources consumed by end-user analysis tools. Its objective ensure...