Dhinakar S. Kompala

ORCID: 0000-0002-9617-1036
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Research Areas
  • Viral Infectious Diseases and Gene Expression in Insects
  • Protein purification and stability
  • Microbial Metabolic Engineering and Bioproduction
  • Virus-based gene therapy research
  • 3D Printing in Biomedical Research
  • Bacteriophages and microbial interactions
  • Monoclonal and Polyclonal Antibodies Research
  • Gene Regulatory Network Analysis
  • Bacterial Genetics and Biotechnology
  • Innovative Microfluidic and Catalytic Techniques Innovation
  • RNA Interference and Gene Delivery
  • Biofuel production and bioconversion
  • Enzyme Production and Characterization
  • Pancreatic function and diabetes
  • Enzyme Catalysis and Immobilization
  • Fungal and yeast genetics research
  • Hematopoietic Stem Cell Transplantation
  • Liver physiology and pathology
  • Transgenic Plants and Applications
  • Cellular Automata and Applications
  • Vibrio bacteria research studies
  • Artificial Immune Systems Applications
  • Minerals Flotation and Separation Techniques
  • Space Exploration and Technology
  • thermodynamics and calorimetric analyses

University of Colorado Boulder
1998-2009

University of Colorado System
2000-2002

Purdue University West Lafayette
1984-1987

Abstract Experimental elucidation of the metabolic load placed on bacteria by expression foreign protein is presented. The host/vector system Escherichia coli RR1/pBR329 (amp r , cam and let ). Plasmid content results, which indicate that plasmid copy number monotonically increases with decreasing growth rate, are consistent literature ColE1‐like plasmids. More significantly, we have experimentally quantified reduction in rate brought about chloramphenicol‐acetyl‐transferase (CAT)...

10.1002/bit.260350704 article EN Biotechnology and Bioengineering 1990-03-25

Cybernetic models, developed earlier by the authors, have been evaluated experimentally for growth of Klebsiella oxytoca in batch cultures using mixed substrates from glucose, xylose, arabinose, lactose, and fructose. Based entirely on information procured single substrates, models accurately predict without further parameter fitting, diauxic automatically predicting order which are consumed. Even triauxic a mixture lactose is predicted model based substrate data. Growth glucose-fructose...

10.1002/bit.260280715 article EN Biotechnology and Bioengineering 1986-07-01

Abstract The internal regulatory processes, which underlie a variety of behavior in microbial growth on multiple substrates, are viewed as manifestation an invariant strategy to optimize some goal the cells. A goal‐seeking or cybernetic model is proposed here, with optimization obased short‐term perspective response environment. parameters determined from data single substrates. predicts entire range substrates simultaneous utilization all sugars sequential pronounced diauxic lags. It shown...

10.1002/bit.260261103 article EN Biotechnology and Bioengineering 1984-11-01

A structured kinetic model is developed to describe the dynamics of hybridoma growth and production monoclonal antibodies metabolic waste products in suspension culture. The crucial details known processes cells are incorporated by dividing cell mass into four intracellular pools. framework structure allow dynamic calculation instantaneous specific rate a steady state simulations equations exhibit excellent agreement with experimentally observed trends substrate utilization product...

10.1002/bit.260340412 article EN Biotechnology and Bioengineering 1989-08-05

Abstract The continuous separation of nonviable hybridoma cells from viable by using a narrow rectangular channel that is inclined the vertical has been investigated experimentally. effectiveness settler in selectively retaining hybridomas bioreactor while permitting removal shown to depend on flow rate through settler. Intermediate rates have found provide highest relative retention. At high dilution chemostat, over 95% could be partitioned bottom 50% are removed top This successful due...

10.1021/bp00006a600 article EN Biotechnology Progress 1990-11-01

Abstract Several published experiments in the literature have provided main guidelines for a quantitative modeling approach called “cybernetic modeling.” Cybernetic models correlated bacterial growth with mixed substrate systems remarkable accuracy.

10.1002/btpr.5420030302 article EN Biotechnology Progress 1987-09-01

The instantaneous specific growth rate of a recombinant bacterial culture is directly calculated using simple structured kinetic modeling approach. Foreign plasmid replication and foreign protein expression represent metabolic burdens to the host cell. individual effects these plasmid-mediated activities on plasmid-bearing cells are estimated separately. dynamic steady state simulations model equations show remarkable agreement with widely observed experimental trends in copy number content....

10.1002/bit.260330108 article EN Biotechnology and Bioengineering 1989-01-05

Abstract The perfusion culture of suspended mammalian cells requires a cell retention device, the best which will retain all viable and reject nonviable debris. inclined settler is passive, simple, inexpensive, easy‐to‐maintain device that has been shown in past to selectively remove single hybridoma cultures. In this work, we have demonstrated preferential return recombinant Chinese hamster ovary (CHO) through use three‐port maintained at lower temperatures vibrated reduce attachment...

10.1021/bp00026a600 article EN Biotechnology Progress 1994-03-01

The dynamics of chemically induced chloramphenicolaceyl-transferase (CAT) expression are determined in batch cultures Escherichia coli DH5alphaF'IQ [pKK262-1]. This article is directed towards understanding the coupling cloned-protein synthesis and reduced cell growth which balanced optimal system. Experimental results indicate that best inducer (IPTG) concentration near 1.0 mM when added during midexponential growth. Lower concentrations cause only weak induction, whereas higher...

10.1002/bit.260380709 article EN Biotechnology and Bioengineering 1991-10-05

Abstract Zymomonas mobilis engineered to express four heterologous enzymes required for xylose utilization ferments along with glucose. A network of pentose phosphate (PP) pathway enzymatic reactions interacting the native glycolytic Entner Doudoroff (ED) has been hypothesized. We have investigated this putative reaction by developing a kinetic model incorporating all PP and ED pathways, including those catalyzed enzymes. Starting experimental literature on in vitro characterization each...

10.1002/bit.20843 article EN Biotechnology and Bioengineering 2006-03-28

Abstract Recombinant mammalian cultures for heterologous gene expression typically involve cells traversing the cell cycle. Studies were conducted to characterize rates of accumulation intracellular foreign protein in single during cycle Chinese hamster ovary (CHO) transfected with an vector containing dihydrofolate reductase ( dhfr ) and lacZ bacterial β‐galactosidase (a nonsecreated protein). The was under control constitutive cytomegalovirus promoter. These normally attachment‐grown...

10.1002/bit.260420914 article EN Biotechnology and Bioengineering 1993-11-05

A novel Eschericha coli expression system directed by bacteriophage T7 RNA Polymerase utilized for overexpression of the cloned gene. The recombinant cell contains plasmid with a promoter, to regulate target This promoter is recognized only polymerase, whose gene has been fused into host chromosome and under control lacUV5 promoter. Therefore, on can be expressed in presence which induced isopropyl-beta-D-thiogalactopyranoside (IPTG). batch cultures were performed investigate effect...

10.1002/bit.260400706 article EN Biotechnology and Bioengineering 1992-10-05

We have investigated the independent effects of selective gene amplification (using dhfr amplifiable selection marker) and culture operating strategy (batch vs repeated fed-batch semicontinuous perfusion) on glycosylation a recombinant reporter protein (secreted alkaline phosphatase, SEAP) produced in transfected Chinese hamster ovary (CHO) cells. HPLC analyses coupled with susceptibility to various exoglycosidases were used determine N-glycosylation profile SEAP samples. The amplified cell...

10.1021/bp049761m article EN Biotechnology Progress 2005-02-04

10.1111/j.1749-6632.1990.tb24239.x article EN Annals of the New York Academy of Sciences 1990-05-01

Large-scale cultivation of murine bone marrow cells was accomplished in an airlift packed bed bioreactor system designed to mimic the vivo environment. The attachment-dependent stromal cell population, which provides necessary microenvironment, including growth factors for subsequent hematopoietic activity, first established within bioreactor. This occurred on fiber-glass matrix annular region Once layer established, fresh were inoculated initiate hematopoiesis. However, traditional culture...

10.1002/(sici)1097-0290(19960605)50:5<514::aid-bit5>3.0.co;2-i article EN Biotechnology and Bioengineering 2000-03-26

The primary advantage of an inducible promoter expression system is that production the recombinant protein can be biochemically controlled, allowing for separation unique growth and phases culture. During phase, culture rapidly grown to high cell density prior induction without extra metabolic burden exogenous production, thus minimizing nonproductive period Induction at ensures volumetric will maximized. In this work, we have demonstrated feasibility overexpressing a reporter glycoprotein...

10.1021/bp049973j article EN Biotechnology Progress 2004-10-01
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