Melissa A. Toups

ORCID: 0000-0002-9752-7380
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About
Contact & Profiles
Research Areas
  • Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities
  • Chromosomal and Genetic Variations
  • Plant Reproductive Biology
  • Evolution and Genetic Dynamics
  • Genetic diversity and population structure
  • Plant and animal studies
  • Animal Behavior and Reproduction
  • Insect symbiosis and bacterial influences
  • Dermatological diseases and infestations
  • Yersinia bacterium, plague, ectoparasites research
  • RNA modifications and cancer
  • MicroRNA in disease regulation
  • Reproductive biology and impacts on aquatic species
  • Insect Resistance and Genetics
  • Bird parasitology and diseases
  • Wildlife Ecology and Conservation
  • Hymenoptera taxonomy and phylogeny
  • Fossil Insects in Amber
  • Primate Behavior and Ecology
  • Plant Molecular Biology Research
  • Amphibian and Reptile Biology
  • Parasite Biology and Host Interactions
  • Insect-Plant Interactions and Control
  • Cancer-related molecular mechanisms research
  • Plant Parasitism and Resistance

Bournemouth University
2022-2023

Institute of Science and Technology Austria
2017-2022

University of Lausanne
2015-2022

The University of Texas at Austin
2017-2019

Indiana University Bloomington
2010-2019

Florida Museum of Natural History
2008-2013

Indiana University
2010-2011

University of Florida
2008-2010

Tulane University
2010

Suppressed recombination allows divergence between homologous sex chromosomes and the functionality of their genes. Here, we reveal patterns earliest stages sex-chromosome evolution in diploid dioecious herb

10.1534/genetics.119.302045 article EN Genetics 2019-05-21

Sex chromosomes have evolved independently multiple times, but why some are conserved for more than 100 million years whereas others turnover rapidly remains an open question. Here, we examine the homology of sex across nine orders insects, plus outgroup springtails. We find that X chromosome is likely homologous insects and springtails; only exception in Lepidoptera, which has lost now a ZZ/ZW sex-chromosome system. These results suggest ancestral insect persisted 450 years-the oldest known...

10.1093/evolut/qpad169 article EN cc-by Evolution 2023-09-20

The mosquito Anopheles gambiae has heteromorphic sex chromosomes, while the Aedes aegypti homomorphic chromosomes. We use retrotransposed gene duplicates to show an excess of movement off An. X chromosome only after split with Ae. aegypti, suggesting that their ancestor had

10.1534/genetics.110.118794 article EN Genetics 2010-07-27

Understanding the evolution of parasites is important to both basic and applied evolutionary biology. Knowledge genetic structure parasite populations critical for our ability predict how an infection can spread through a host population design effective control methods. However, very little known about most human parasites, including louse (Pediculus humanus). This species composed two ecotypes: head humanus capitis De Geer), clothing (body) Linnaeus). Hundreds millions infestations affect...

10.1371/journal.pone.0057619 article EN cc-by PLoS ONE 2013-02-27

Sexual dimorphism in morphology, physiology or life history traits is common dioecious plants at reproductive maturity, but it typically inconspicuous absent juveniles. Although of different sexes probably begin to diverge gene expression both before their reproduction commences and becomes readily apparent, our knowledge transcriptome-wide differential has yet be demonstrated for any angiosperm species.The present study documents differences above- below-ground tissues early...

10.1093/aob/mcy183 article EN Annals of Botany 2018-09-06

Males and females of Artemia franciscana, a crustacean commonly used in the aquarium trade, are highly dimorphic. Sex is determined by pair ZW chromosomes, but nature extent differentiation these chromosomes unknown. Here, we characterize Z chromosome detecting genomic regions that show lower coverage female than male samples, harbor an excess female-specific SNPs. We detect many Z-specific genes, which no longer have homologs on W, also Z-linked genes appear to diverged very recently from...

10.1093/gbe/evz053 article EN cc-by Genome Biology and Evolution 2019-03-12

Parasites may cause fecundity reduction in their hosts via life-history strategies involving simple nutrient theft or manipulation of host energy allocation. Simple nutrients incidentally reduces allocation to reproduction, whereas is a parasite-driven diversion away from reproduction. We aimed determine whether the diphyllobothriidean cestode parasite Schistocephalus solidus causes loss threespine stickleback fish (Gasterosteus aculeatus) through In one population (Walby Lake,...

10.1111/j.1095-8312.2010.01486.x article EN Biological Journal of the Linnean Society 2010-07-15

Most of our knowledge sex-chromosome evolution comes from male heterogametic (XX/XY) taxa. With the genome sequencing multiple female (ZZ/ZW) taxa, we can now ask whether there are patterns common to both sex chromosome systems. In all XX/XY systems examined date, is an excess testis-biased retrogenes moving X autosomes, which hypothesized result either sexually antagonistic selection or escape meiotic inactivation (MSCI). We RNA-mediated (retrotransposed) and DNA-mediated gene movement in...

10.1093/gbe/evr109 article EN cc-by-nc Genome Biology and Evolution 2011-01-01

Abstract X and Y chromosomes can diverge when rearrangements block recombination between them. Here we present the first genomic view of a reciprocal translocation that causes two physically unconnected pairs to be coinherited as sex chromosomes. In population common frog ( Rana temporaria ), both show extensive sequence differentiation, but not degeneration A new method based on gene trees shows are sex‐linked. Furthermore, from have identical topologies, showing they been since occurred....

10.1111/mec.14990 article EN Molecular Ecology 2018-12-21

Sex-biased genes are central to the study of sexual selection, antagonism, and sex chromosome evolution. We describe a comprehensive de novo assembled transcriptome in common frog Rana temporaria based on five developmental stages three adult tissues from both sexes, obtained population with karyotypically homomorphic but genetically differentiated chromosomes. This allows sex-biased gene expression throughout development, its effect rate evolution while accounting for pleiotropic...

10.3390/genes9060294 article EN Genes 2018-06-12

The soil bacterium Myxococcus xanthus is a model for the study of cooperative microbial behaviours such as social motility and fruiting body formation. Several M. developmental traits that are frequently quantified laboratory strains likely to be significant components fitness in natural populations, yet little known about degree which vary wild may therefore subject selection. Here, we have tested whether several key life-history diverged significantly among both from globally distant...

10.1111/j.1574-6941.2010.00888.x article EN FEMS Microbiology Ecology 2010-04-14

Abstract Sewall Wright developed F ST for describing population differentiation and it has since been extended to many novel applications, including the detection of homomorphic sex chromosomes. However, there confusion regarding expected estimate a fixed difference between X‐ Y‐chromosome when comparing males females. Here, we attempt resolve this by contrasting two common estimators explain why they yield different estimates applied case We show that is true allele frequencies, but...

10.1111/1755-0998.13210 article EN cc-by Molecular Ecology Resources 2020-06-16

Abstract Sex chromosomes have evolved independently multiple times, but why some are conserved for more than 100 million years whereas others turnover rapidly remains an open question. Here, we examine the homology of sex across nine orders insects, plus outgroup springtails. We find that X chromosome is shared among all insect and springtails; only exception in Lepidoptera, which has lost now a ZZ/ZW system. Therefore, ancestral persisted 450 – oldest known to date. Further, suggest...

10.1101/2023.04.19.537501 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2023-04-21

Abstract Eurasian brine shrimp (genus Artemia) have closely related sexual and asexual lineages of parthenogenetic females, which produce rare males at low frequencies. Although they are known to ZW chromosomes, these not well characterized, it is unclear whether shared across the clade. Furthermore, underlying genetic architecture transmission asexuality, can occur when mate with understood. We produced a chromosome-level assembly for species Artemia sinica characterized in detail pair sex...

10.1093/genetics/iyac123 article EN cc-by Genetics 2022-08-17

Abstract Many insects carry an ancient X chromosome—the Drosophila Muller element F—that likely predates their origin. Interestingly, the has undergone turnover in multiple fly species (Diptera) after being conserved for more than 450 My. The long evolutionary distance between Diptera and other sequenced insect clades makes it difficult to infer what could have contributed this sudden increase rate of turnover. Here, we produce first genome transcriptome a overlooked sister-order Diptera:...

10.1093/molbev/msad245 article EN cc-by Molecular Biology and Evolution 2023-11-21

Polyploidization may precipitate dramatic changes to the genome, including chromosome rearrangements, gene loss, and in expression. In dioecious plants, sex-determining mechanism also be disrupted by polyploidization, with potential evolution of hermaphroditism. However, while dioecy appears have persisted through a ploidy transition some species, it is unknown whether newly formed polyploid maintained its system uninterrupted, or re-evolved after period Here, we develop bioinformatic...

10.1371/journal.pgen.1010226 article EN cc-by PLoS Genetics 2022-07-06

Abstract Suppressed recombination around a sex-determining locus allows divergence between homologous sex chromosomes and the functionality of their genes. Here, we reveal patterns earliest stages sex-chromosome evolution in diploid dioecious herb Mercurialis annua on basis cytological analysis, de novo genome assembly annotation, genetic mapping, exome resequencing natural populations, transcriptome analysis. Both mapping individuals across species range independently identified largest...

10.1101/106120 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2017-02-05

Abstract Many insects carry an ancient X chromosome - the Drosophila Muller element F that likely predates their origin. Interestingly, has undergone turnover in multiple fly species (Diptera) after being conserved for more than 450 MY. The long evolutionary distance between Diptera and other sequenced insect clades makes it difficult to infer what could have contributed this sudden increase rate of turnover. Here, we produce first genome transcriptome a overlooked sister-order Diptera:...

10.1101/2023.07.11.548499 preprint EN cc-by-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-07-12

Abstract Eurasian brine shrimp (genus Artemia ) have closely related sexual and asexual lineages of parthenogenetic females, which produce rare males at low frequencies. Although they are known to ZW chromosomes, these not well characterized, it is unclear whether shared across the clade. Furthermore, underlying genetic architecture transmission asexuality, can occur when mate with understood. We produced a chromosome-level assembly for species A. sinica characterized in detail pair sex...

10.1101/2022.04.27.489735 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2022-04-29
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