Tom Vercauteren

ORCID: 0000-0003-1794-0456
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About
Contact & Profiles
Research Areas
  • Medical Image Segmentation Techniques
  • Photoacoustic and Ultrasonic Imaging
  • Fetal and Pediatric Neurological Disorders
  • Radiomics and Machine Learning in Medical Imaging
  • Advanced Neural Network Applications
  • Optical Imaging and Spectroscopy Techniques
  • Domain Adaptation and Few-Shot Learning
  • AI in cancer detection
  • Medical Imaging and Analysis
  • Robotics and Sensor-Based Localization
  • Medical Imaging Techniques and Applications
  • Colorectal Cancer Screening and Detection
  • Meningioma and schwannoma management
  • Advanced Vision and Imaging
  • Surgical Simulation and Training
  • Ultrasound Imaging and Elastography
  • Nanoplatforms for cancer theranostics
  • Advanced Neuroimaging Techniques and Applications
  • Neonatal and fetal brain pathology
  • Pregnancy and preeclampsia studies
  • Prenatal Screening and Diagnostics
  • Optical Coherence Tomography Applications
  • Advanced MRI Techniques and Applications
  • Anatomy and Medical Technology
  • Assisted Reproductive Technology and Twin Pregnancy

King's College London
2018-2025

KU Leuven
2017-2024

King's College School
2022-2024

University of Bristol
2024

University College London
2015-2023

Wellcome / EPSRC Centre for Interventional and Surgical Sciences
2017-2023

St Thomas' Hospital
2018-2023

Lambeth Hospital
2020-2023

Kings Health Partners
2018-2023

Universidade do Porto
2023

Convolutional neural networks (CNNs) have achieved state-of-the-art performance for automatic medical image segmentation. However, they not demonstrated sufficiently accurate and robust results clinical use. In addition, are limited by the lack of image-specific adaptation generalizability to previously unseen object classes (a.k.a. zero-shot learning). To address these problems, we propose a novel deep learning-based interactive segmentation framework incorporating CNNs into bounding box...

10.1109/tmi.2018.2791721 article EN cc-by IEEE Transactions on Medical Imaging 2018-01-26

Medical image analysis and computer-assisted intervention problems are increasingly being addressed with deep-learning-based solutions. Established deep-learning platforms flexible but do not provide specific functionality for medical adapting them this domain of application requires substantial implementation effort. Consequently, there has been duplication effort incompatible infrastructure developed across many research groups. This work presents the open-source NiftyNet platform deep...

10.1016/j.cmpb.2018.01.025 article EN cc-by Computer Methods and Programs in Biomedicine 2018-01-31

Despite the state-of-the-art performance for medical image segmentation, deep convolutional neural networks (CNNs) have rarely provided uncertainty estimations regarding their segmentation outputs, e.g., model (epistemic) and image-based (aleatoric) uncertainties. In this work, we analyze these different types of uncertainties CNN-based 2D 3D tasks. We additionally propose a test-time augmentation-based aleatoric to effect transformations input on output. Test-time augmentation has been...

10.1016/j.neucom.2019.01.103 article EN cc-by Neurocomputing 2019-02-10

Accurate medical image segmentation is essential for diagnosis and treatment planning of diseases. Convolutional Neural Networks (CNNs) have achieved state-of-the-art performance automatic segmentation. However, they are still challenged by complicated conditions where the target has large variations position, shape scale, existing CNNs a poor explainability that limits their application to clinical decisions. In this work, we make extensive use multiple attentions in CNN architecture...

10.1109/tmi.2020.3035253 article EN IEEE Transactions on Medical Imaging 2020-11-02

EMPIRE10 (Evaluation of Methods for Pulmonary Image REgistration 2010) is a public platform fair and meaningful comparison registration algorithms which are applied to database intrapatient thoracic CT image pairs. Evaluation nonrigid techniques nontrivial task. This compounded by the fact that researchers typically test only on their own data, varies widely. For this reason, reliable assessment different has been virtually impossible in past. In work we present results launch phase...

10.1109/tmi.2011.2158349 article EN IEEE Transactions on Medical Imaging 2011-06-07

Accurate medical image segmentation is essential for diagnosis, surgical planning and many other applications. Convolutional Neural Networks (CNNs) have become the state-of-the-art automatic methods. However, fully results may still need to be refined accurate robust enough clinical use. We propose a deep learning-based interactive method improve obtained by an CNN reduce user interactions during refinement higher accuracy. use one obtain initial segmentation, on which are added indicate...

10.1109/tpami.2018.2840695 article EN cc-by IEEE Transactions on Pattern Analysis and Machine Intelligence 2018-06-01

One of the fundamental challenges in supervised learning for multimodal image registration is lack ground-truth voxel-level spatial correspondence. This work describes a method to infer transformation from higher-level correspondence information contained anatomical labels. We argue that such labels are more reliable and practical obtain reference sets pairs than Typical interest may include solid organs, vessels, ducts, structure boundaries other subject-specific ad hoc landmarks. The...

10.1016/j.media.2018.07.002 article EN cc-by Medical Image Analysis 2018-07-04

We present the Spherical Demons algorithm for registering two spherical images. By exploiting vector spline interpolation theory, we show that a large class of regularizors modified objective function can be efficiently approximated on sphere using iterative smoothing. Based one parameter subgroups diffeomorphisms, resulting registration is diffeomorphic and fast. The also to register given image probabilistic atlas. demonstrate variants corresponding warping atlas or subject. Registration...

10.1109/tmi.2009.2030797 article EN IEEE Transactions on Medical Imaging 2009-08-25

Section:ChooseTop of pageAbstract <<METHODSRESULTSORIGINS OF THE BRONCHIAL ...FCFM ENDOSCOPY PATHOLO...DISCUSSIONReferencesCITING ARTICLES

10.1164/rccm.200605-684oc article EN American Journal of Respiratory and Critical Care Medicine 2006-10-06

Artificial Intelligence (AI) is having a tremendous impact across most areas of science. Applications AI in healthcare have the potential to improve our ability detect, diagnose, prognose, and intervene on human disease. For models be used clinically, they need made safe, reproducible robust, underlying software framework must aware particularities (e.g. geometry, physiology, physics) medical data being processed. This work introduces MONAI, freely available, community-supported,...

10.48550/arxiv.2211.02701 preprint EN cc-by arXiv (Cornell University) 2022-01-01

High-resolution volume reconstruction from multiple motion-corrupted stacks of 2D slices plays an increasing role for fetal brain Magnetic Resonance Imaging (MRI) studies. Currently existing methods are time-consuming and often require user interactions to localize extract the several slices. We propose a fully automatic framework that consists four stages: 1) localization based on coarse segmentation by Convolutional Neural Network (CNN), 2) fine another CNN trained with multi-scale loss...

10.1016/j.neuroimage.2019.116324 article EN cc-by NeuroImage 2019-11-06

Automatic segmentation of brain tumors from medical images is important for clinical assessment and treatment planning tumors. Recent years have seen an increasing use convolutional neural networks (CNNs) this task, but most them either 2D with relatively low memory requirement while ignoring 3D context, or exploiting features large consumption. In addition, existing methods rarely provide uncertainty information associated the result. We propose a cascade CNNs to segment hierarchical...

10.3389/fncom.2019.00056 article EN cc-by Frontiers in Computational Neuroscience 2019-08-13

Real-time tool segmentation from endoscopic videos is an essential part of many computer-assisted robotic surgical systems and critical importance in data science. We propose two novel deep learning architectures for automatic non-rigid instruments. Both methods take advantage automated deep-learning-based multi-scale feature extraction while trying to maintain accurate quality at all resolutions. The proposed encode the constraint inside network architecture. first architecture enforces it...

10.1109/iros.2017.8206462 article EN 2021 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) 2017-09-01
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