Ivanka Kamenova

ORCID: 0000-0003-2645-9031
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About
Contact & Profiles
Research Areas
  • Genomics and Chromatin Dynamics
  • RNA Research and Splicing
  • RNA and protein synthesis mechanisms
  • Ubiquitin and proteasome pathways
  • Epigenetics and DNA Methylation
  • Congenital heart defects research
  • Fungal and yeast genetics research
  • Cancer-related molecular mechanisms research
  • Gene Regulatory Network Analysis
  • Advanced biosensing and bioanalysis techniques

Inserm
2018-2023

Institut de génétique et de biologie moléculaire et cellulaire
2014-2023

Université de Strasbourg
2014-2023

Centre National de la Recherche Scientifique
2018-2023

Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa
2014

Fred Hutch Cancer Center
2014

Abstract Cells dedicate significant energy to build proteins often organized in multiprotein assemblies with tightly regulated stoichiometries. As genes encoding subunits assembling a multisubunit complex are dispersed the genome of eukaryotes, it is unclear how these protein complexes assemble. Here, we show that mammalian nuclear transcription (TFIID, TREX-2 and SAGA) composed large number subunits, but lacking precise architectural details built co-translationally. We demonstrate...

10.1038/s41467-019-09749-y article EN cc-by Nature Communications 2019-04-15

Abstract Large heteromeric multiprotein complexes play pivotal roles at every step of gene expression in eukaryotic cells. Among them, the 20-subunit basal transcription factor TFIID nucleates RNA polymerase II preinitiation complex promoters. Here, by combining systematic RNA-immunoprecipitation (RIP) experiments, single-molecule imaging, proteomics and structure–function analyses, we show that human biogenesis occurs co-translationally. We discovered all protein heterodimerization steps...

10.1038/s41594-023-01026-3 article EN cc-by Nature Structural & Molecular Biology 2023-06-29

Most RNA polymerase (Pol) II promoters lack a TATA element, yet nearly all Pol transcription requires binding protein (TBP). While the TBP-TATA interaction is critical for at TATA-containing promoters, it has been unclear whether TBP sequence-specific DNA contacts are required TATA-less genes. Transcription factor IID (TFIID), TBP-containing coactivator that functions most genes, recognizes short promoter elements in metazoans, but analogous have not identified Saccharomyces cerevisiae. We...

10.1128/mcb.01685-13 article EN Molecular and Cellular Biology 2014-05-28

Large heteromeric multiprotein complexes play pivotal roles at every step of gene expression in eukaryotic cells. Among them, the 20-subunit basal transcription factor TFIID nucleates RNA polymerase II preinitiation complex promoters. Here, by combining systematic RNA-immunoprecipitation (RIP) experiments, single-molecule imaging, proteomics and structure-function analyses, we show that biogenesis occurs co-translationally. We discovered all protein heterodimerization steps happen during...

10.1101/2023.04.05.535704 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-04-05

A bstract Cells dedicate significant energy to build proteins often organized in multiprotein assemblies with tightly regulated stoichiometries. As genes encoding assembling the same multisubunit complexes are dispersed genome of eukaryotes, it is unclear how assemble. We show that mammalian nuclear transcription (TFIID, TREX-2 and SAGA) composed a large number subunits but lacking precise architectural details built co-translationally. demonstrate dimerization domains their positions...

10.1101/419812 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2018-09-17

10.1038/d42859-019-00076-2 article EN Nature Research 2019-11-14
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