A5105663542- Genetic and phenotypic traits in livestock
- Aquaculture disease management and microbiota
- Plant Physiology and Cultivation Studies
- Wheat and Barley Genetics and Pathology
- Horticultural and Viticultural Research
- Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities
- Chromosomal and Genetic Variations
- Reproductive biology and impacts on aquatic species
- Aquaculture Nutrition and Growth
- Plant Reproductive Biology
- Genetic Mapping and Diversity in Plants and Animals
- Plant Disease Resistance and Genetics
- Animal Genetics and Reproduction
- Genetic diversity and population structure
- Genetics and Plant Breeding
- Fish Ecology and Management Studies
- Ruminant Nutrition and Digestive Physiology
- European Criminal Justice and Data Protection
- Genomics and Phylogenetic Studies
- Cancer-related molecular mechanisms research
- Legume Nitrogen Fixing Symbiosis
- Vector-borne infectious diseases
- Identification and Quantification in Food
- Animal Virus Infections Studies
- Plant Virus Research Studies
Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
2016-2025
Université Clermont Auvergne
2014-2025
Génétique, Diversité, Écophysiologie des Céréales
2015-2024
Centre National de la Recherche Scientifique
2023
Genoscope
2023
Inserm
2023
Commissariat à l'Énergie Atomique et aux Énergies Alternatives
2023
France Génomique
2023
Institute of Animal Reproduction and Food Research
2023
Centre Île-de-France - Jouy-en-Josas - Antony
2020
Because of their abundance and amenability to high-throughput genotyping techniques, Single Nucleotide Polymorphisms (SNPs) are powerful tools for efficient genetics genomics studies, including characterization genetic resources, genome-wide association studies genomic selection. In wheat, most the previous SNP discovery initiatives targeted coding fraction, leaving almost 98% wheat genome largely unexploited. Here we report on use whole-genome resequencing data from eight lines mine SNPs in...
Cultivated apple (Malus × domestica Borkh.) is one of the most important fruit crops in temperate regions, and has great economic cultural value. The genome highly heterozygous undergone a recent duplication which, combined with rapid linkage disequilibrium decay, makes it difficult to perform genome-wide association (GWA) studies. Single nucleotide polymorphism arrays offer multiplexed assays at relatively low cost per data point can be valid tool for identification markers associated...
Abstract Bread wheat (Triticum aestivum) inflorescences, or spikes, are characteristically unbranched and normally bear one spikelet per rachis node. Wheat mutants on which supernumerary spikelets (SSs) develop particularly useful resources for work towards understanding the genetic mechanisms underlying inflorescence architecture and, ultimately, yield components. Here, we report characterization of genetically unrelated leading to identification FRIZZY PANICLE (FZP) gene, encoding a member...
The amount and structure of genetic diversity in dessert apple germplasm conserved at a European level is mostly unknown, since all studies conducted Europe until now have been performed on regional or national collections. Here, we applied common set 16 SSR markers to genotype more than 2,400 accessions across 14 collections representing three broad geographic regions (North + East, West South) with the aim analyze extent, distribution variation resources Europe. A Bayesian model-based...
Deciphering the genetic control of flowering and ripening periods in apple is essential for breeding cultivars adapted to their growing environments. We implemented a large Genome-Wide Association Study (GWAS) at European level using an association panel 1,168 different genotypes distributed over six locations phenotyped these phenological traits. The was genotyped high-density SNPs Axiom®Apple 480 K SNP array. ran GWAS with multi-locus mixed model (MLMM), which handles putatively...
Selective breeding is a relatively recent practice in aquaculture species compared to terrestrial livestock. Nevertheless, the genetic variability of farmed salmonid lines, which have been selected for several generations, should be assessed. Indeed, significant decrease due high selection intensity could occurred, potentially jeopardizing long-term progress as well adaptive capacities populations facing change(s) environment. Thus, it important evaluate impact practices on diversity limit...
Crop wild relatives represent valuable sources of alleles for crop improvement, including adaptation to climate change and emerging diseases. However, introgressions from might have deleterious effects on desirable traits, yield, due linkage drag. Here, we analyzed the genomic phenotypic impacts in inbred lines cultivated sunflower estimate First, generated reference sequences seven one genotype, as well improved assemblies two additional cultivars. Next, relying previously donor species,...
The evolution of sex determination (SD) in teleosts is amazingly dynamic, as reflected by the variety different master sex-determining genes identified. Pangasiids are economically important catfishes South Asian countries, but little known about their SD system. Here, we generated novel genomic resources for 12 and characterized Based on a Pangasianodon hypophthalmus chromosome-scale genome assembly, identified an anti-Müllerian hormone receptor type Ⅱ gene (amhr2) duplication, which was...
The Percidae family comprises many fish species of major importance for aquaculture and fisheries. Based on three new chromosome-scale assemblies in Perca fluviatilis, schrenkii, Sander vitreus along with additional percid reference genomes, we provide an evolutionary comparative genomic analysis their sex-determination systems.
Abstract Background Carotenoids are isoprenoid pigments, essential for photosynthesis and photoprotection in plants. The enzyme phytoene synthase (PSY) plays an role mediating condensation of two geranylgeranyl diphosphate molecules, the first committed step carotenogenesis. PSY nuclear enzymes encoded by a small gene family consisting three paralogous genes ( 1-3) that have been widely characterized rice, maize sorghum. Results In wheat, which yellow pigment content is extremely important...
Meiotic recombination by crossovers (COs) is tightly regulated, limiting its key role in producing genetic diversity. However, while COs are usually restricted number and not homogenously distributed along chromosomes, we show here how to disrupt these rules Brassica species using allotriploid hybrids (AAC, 2n = 3x 29), resulting from the cross between allotetraploid rapeseed (B. napus, AACC, 4x 38) one of diploid progenitors rapa, AA, 2x 20). We produced mapping populations different...
Rainbow trout is a significant fish farming species under temperate climates. Female reproduction traits play an important role in the economy of breeding companies with sale fertilized eggs. The objectives this study are threefold: to estimate genetic parameters female traits, determine architecture these by identification quantitative trait loci (QTL), and assess expected efficiency pedigree-based selection (BLUP) or genomic for traits.
Sex determination is a flexible process in fish, controlled by genetics or environmental factors combination of both depending on the species. Revealing underlying molecular mechanisms may have important implications for research reproductive development vertebrates, as well sex-ratio control and selective breeding fish. Phenotypic sex rainbow trout ( Oncorhynchus mykiss ) primarily XX/XY male heterogametic system. Unexpectedly genetically XX all-female farmed populations, small proportion...
Abstract Symbiotic nitrogen-fixing rhizobia are able to trigger root deformation in their Fabaceae host plants, allowing intracellular accommodation. They do so by delivering molecules called Nod factors. We analyzed the patterns of nucleotide polymorphism five genes controlling early factor perception and signaling Medicago truncatula understand selective forces shaping evolution these genes. used 30 M. genotypes sampled a genetically homogeneous region species distribution range. first...
Summary Characterizing the natural diversity of gene expression across environments is an important step in understanding how genotype‐by‐environment interactions shape phenotypes. Here, we analyzed impact water deficit onto levels tomato at genome‐wide scale. We sequenced transcriptome growing leaves and fruit pericarps cell expansion stage a cherry large fruited accession their F 1 hybrid grown under two watering regimes. Gene were steadily affected by genotype regime. Whereas phenotypes...
The sequencing of individual chromosomes common wheat is in progress. molecular size chromosome 5B nearly 870 Mb (5BL = 580 and 5BS 290 Mb). We produced the first low coverage 454‐sequencing long short arms (110,793 39,695 reads, which compose 8 6% total 5BL length, respectively) calculated ratios different families repetitive sequences, including transposable elements (TEs), satellite repeats ( Afa , pSc119.2 5S rDNA 45S rDNA), microsatellites, as well direct inverted repeat motifs. TEs...
Single nucleotide polymorphism (SNP) arrays, also named « SNP chips », enable very large numbers of individuals to be genotyped at a targeted set thousands genome-wide identified markers. We used preexisting variant datasets from USDA, French commercial line and 30X-coverage whole genome sequencing INRAE isogenic lines develop an Affymetrix 665 K array (HD chip) for rainbow trout. In total, we 32,372,492 SNPs that were polymorphic in the USDA or databases. A subset selected inclusion on...