A5085052556- Photosynthetic Processes and Mechanisms
- Genomics and Phylogenetic Studies
- Epigenetics and DNA Methylation
- Innovation Policy and R&D
- RNA modifications and cancer
- Plant nutrient uptake and metabolism
- Machine Learning in Bioinformatics
- Plant Molecular Biology Research
- Plant Diversity and Evolution
- Mitochondrial Function and Pathology
- Plant and Fungal Species Descriptions
- RNA and protein synthesis mechanisms
- Metabolomics and Mass Spectrometry Studies
- Genetic diversity and population structure
- Advanced Proteomics Techniques and Applications
- Environmental DNA in Biodiversity Studies
- Plant and Biological Electrophysiology Studies
- Cancer-related gene regulation
- Genetics and Neurodevelopmental Disorders
- Cancer Genomics and Diagnostics
- Plant responses to water stress
Curtin University
2022
The University of Western Australia
2004-2020
Australian Research Council
2005-2020
ARC Centre of Excellence in Plant Energy Biology
2005-2019
Jilin University
2013
Icahn School of Medicine at Mount Sinai
2013
Ludwig-Maximilians-Universität München
2006
Epigenetic Brainscape modifications and their potential changes during development are of high interest, but few studies have characterized such differences. Lister et al. ( 1237905 , published online 4 July; see the Perspective by Gabel Greenberg ) report whole-genome base-resolution analysis DNA cytosine transcriptome in frontal cortex human mouse brains at multiple developmental stages. The high-resolution mapping methylation (5mC) one its oxidation derivatives (5hmC) key stages provides...
Abstract A novel insight into Arabidopsis mitochondrial function was revealed from a large experimental proteome derived by liquid chromatography–tandem mass spectrometry. Within the set of 416 identified proteins, significant number low-abundance proteins involved in DNA synthesis, transcriptional regulation, protein complex assembly, and cellular signaling were discovered. Nearly 20% experimentally are unknown function, suggesting wealth undiscovered functions plants. Only approximately...
Knowledge of protein localisation contributes towards our understanding function and biological inter-relationships. A variety experimental methods are currently being used to produce data that need be made accessible in an integrated manner. Chimeric fluorescent fusion proteins have been define subcellular localisations with at least 1100 related experiments completed Arabidopsis. More recently, many studies employed mass spectrometry undertake proteomic surveys components Arabidopsis...
Herbaria are valuable sources of extensive curated plant material that now accessible to genetic studies because advances in high-throughput, next-generation sequencing methods. As an applied assessment large-scale recovery plastid and ribosomal genome sequences from herbarium for identification phylogenomics, we sequenced 672 samples covering 21 families, 142 genera 530 named proposed species. We explored the impact parameters such as sample age, DNA concentration quality, read depth...
Abstract Substantial experimental datasets defining the subcellular location of Arabidopsis (Arabidopsis thaliana) proteins have been reported in literature form organelle proteomes built from mass spectrometry data (approximately 2,500 proteins). Subcellular for specific has also published based on imaging chimeric fluorescent fusion intact cells 900 Further, more diverse history biochemical determination is stored entries Swiss-Prot database products many genes 1,800 Combined with range...
Seventeen loci encode proteins of the preprotein and amino acid transporter family in Arabidopsis (Arabidopsis thaliana). Some these genes have arisen from recent duplications are not annotated duplicated regions genome. In comparison to a number other eukaryotic organisms, this has greatly expanded plants, with 24 rice (Oryza sativa). Most orthologous, indicating expansion before monocot dicot divergence. vitro protein uptake assays, vivo green fluorescent tagging, immunological analyses...
The plastid genomes of four related carnivorous plants (Drosera regia, Drosera erythrorhiza, Aldrovanda vesiculosa, and Dionaea muscipula) were sequenced to examine changes potentially induced by the transition carnivory. Droseraceae show multiple rearrangements, gene losses, large expansions or contractions inverted repeat. All ndh genes are lost nonfunctional, as well in some species, clpP1, ycf1, ycf2 tRNA genes. Uniquely, among land plants, trnK has no intron. Carnivory coincides with...
Abstract Motivation: Easily visualization of complex data features is a necessary step to conduct studies on next-generation sequencing (NGS) data. We developed STAR, an integrated web application that enables online management, and track-based analysis NGS Results: STAR multilayer service system. On the client side, leverages JavaScript, HTML5 Canvas asynchronous communications deliver smoothly scrolling desktop-like graphical user interface with suite in-browser tools range from providing...