Bob W. Kooi

ORCID: 0000-0003-3477-9924
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About
Contact & Profiles
Research Areas
  • Mathematical and Theoretical Epidemiology and Ecology Models
  • Evolution and Genetic Dynamics
  • Evolutionary Game Theory and Cooperation
  • Ecosystem dynamics and resilience
  • Mosquito-borne diseases and control
  • COVID-19 epidemiological studies
  • Nonlinear Dynamics and Pattern Formation
  • Ecology and Vegetation Dynamics Studies
  • Viral Infections and Vectors
  • Plant and animal studies
  • Mathematical Biology Tumor Growth
  • Aquatic Ecosystems and Phytoplankton Dynamics
  • Mechanics and Biomechanics Studies
  • Animal Ecology and Behavior Studies
  • Gene Regulatory Network Analysis
  • Marine and coastal ecosystems
  • Historical and Literary Studies
  • Advanced Differential Equations and Dynamical Systems
  • thermodynamics and calorimetric analyses
  • Sustainability and Ecological Systems Analysis
  • Microbial Metabolic Engineering and Bioproduction
  • Algal biology and biofuel production
  • Stochastic processes and statistical mechanics
  • Fungal and yeast genetics research
  • Lipid metabolism and biosynthesis

Vrije Universiteit Amsterdam
2015-2024

Basque Center for Applied Mathematics
2023-2024

University of Sussex
2022

University of Lisbon
2009-2019

Bulgarian Academy of Sciences
2019

Institute of Mathematics and Informatics
2019

University of Trento
2019

Collegio Carlo Alberto
2019

Istituto Nazionale di Alta Matematica Francesco Severi
2019

Fundação para a Ciência e Tecnologia
2012-2016

Abstract The majority of studies on environmental change focus the response single species and neglect fundamental biotic interactions, such as mutualism, competition, predation, parasitism, which complicate patterns persistence. Under global warming, disruption community interactions can arise when differ in their sensitivity to rising temperature, leading mismatched phenologies and/or dispersal patterns. To study persistence under climate change, it is critical consider ecology evolution...

10.1111/j.1365-2486.2009.02014.x article EN Global Change Biology 2009-06-26

In order to evaluate the effects of inducible defences on community stability and persistence, we analyzed models bitrophic tritrophic food chains that incorporate consumer‐induced polymorphisms. These predict intra‐specific heterogeneity in defence levels resolves paradox enrichment for a range top‐down affect consumer death rates all possible primary productivity. We show analytically this can be understood terms differences handling times different prey types. Our predictions still hold...

10.1111/j.0030-1299.2004.12930.x article EN Oikos 2004-05-14

Resource edibility is a crucial factor in ecological theory on the relative importance of bottom-up and top-down control. Current explains trophic structure terms abundance succession edible inedible species across gradients primary productivity. We argue that this explanation incomplete owing to its focus inedibility assumption plants herbivores have fixed defense levels. Consumer-induced defenses are an important source variation vulnerability prey prevalent natural communities. Such...

10.1890/03-0670 article EN Ecology 2004-10-01

Basic models suitable to explain the epidemiology of dengue fever have previously shown possibility deterministically chaotic attractors, which might observed fluctuations found in empiric outbreak data. However, region bifurcations and chaos require strong enhanced infectivity on secondary infection, motivated by experimental findings antibody-dependent-enhancement. Including temporary cross-immunity such models, is common knowledge among field researchers dengue, we find up attractors much...

10.1051/mmnp:2008070 article EN Mathematical Modelling of Natural Phenomena 2008-01-01

Dominance of free-floating plants poses a threat to biodiversity in many freshwater ecosystems. Here we propose theoretical framework understand this dominance, by modeling the competition for light and nutrients layered community floating submerged plants. The model shows that at high supply nutrients, always dominate due their primacy light, even when have lower minimal resource requirements. also floating-plant dominance cannot be an alternative stable state light-limited environments but...

10.1086/681620 article EN The American Naturalist 2015-04-30

In recent years, the population dynamics of plankton in light‐ or nutrient‐limited environments have been studied extensively. Their evolutionary dynamics, however, received much less attention. Here, we used a modeling approach to study behavior living mixed water column. Initially, organisms are mixotrophic and thus both autotrophic heterotrophic abilities. Through evolution their trophic preferences, they can specialize into separate autotrophs heterotrophs. It was found that light...

10.1086/432038 article EN The American Naturalist 2005-08-12

In this paper we investigate long-term dynamics of the most basic model for stage-structured populations, in which per capita transition from juvenile into adult class is density dependent. The represented by an autonomous system two nonlinear differential equations with four parameters a single population. We find that interaction intra-adult competition and intra-juvenile gives rise to multiple attractors, one can be oscillatory. A detailed numerical study reveals rich bifurcation...

10.1137/050627757 article EN SIAM Journal on Applied Mathematics 2006-01-01

We revisit the parameter estimation framework for population biological dynamical systems, and apply it to calibrate various models in epidemiology with empirical time series, namely influenza dengue fever. When comes more complex such as multi-strain dynamics describe virus–host interaction fever, even most recently developed techniques, maximum likelihood iterated filtering, reach their computational limits. However, first results of data on fever from Thailand indicate a subtle interplay...

10.1098/rsfs.2011.0103 article EN Interface Focus 2012-02-01

Oscillations are widely distributed in nature and synchronization of oscillators has been described at the cellular level (e.g. heart cells) population fireflies). Yeast glycolysis is best known oscillatory system, although it studied almost exclusively (i.e. limited to observations average behaviour synchronized cultures). We individual yeast cells that were positioned with optical tweezers a microfluidic chamber determine precise conditions for autonomous glycolytic oscillations. Hopf...

10.1111/febs.12820 article EN FEBS Journal 2014-04-17

Modeling insights for epidemiological scenarios characterized by chaotic dynamics have been largely unexplored. A rigorous analysis of such systems are essential a real predictive power and more accurate disease control decision making. Motivated dengue fever epidemiology, we study basic SIR–SIR type model the host population, capturing differences between primary secondary infections. This is minimalistic version to previously suggested multi-strain models in which deterministic chaos was...

10.1016/j.chaos.2022.112709 article EN cc-by-nc-nd Chaos Solitons & Fractals 2022-10-03

The currently high sludge production and increasing processing costs call for waste-water treatment plants with purification efficiency low biomass production. We studied the latter issue through two-stage chemostat cascades to assess overall reduction due ciliate grazing. bacteria were cultured in first whereas ciliates, grazing on from chemostat, second chemostat. Mathematical modelling was used describe bacteria/ciliate dynamics some of growth parameters fitted. In 22-44% carbon...

10.2166/wst.1994.0322 article EN Water Science & Technology 1994-04-01

Metabolism, and thus population dynamics, can be limited by energy, carbon, nitrogen, and/or other nutrients. This is due to homeostasis, the relatively constant composition of biomass. Yet growth-rate-dependent changes in biomass do exist. The dynamic energy budget (DEB) theory provides framework deal with these simultaneous limitations stoichiometric restrictions. We illustrate application three examples. First, we discuss simple single-species growth a chemolithoautotroph interactions...

10.1890/02-0250 article EN Ecology 2004-05-01
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