Alexis Kalderimis

ORCID: 0000-0003-4687-5411
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About
Contact & Profiles
Research Areas
  • Bioinformatics and Genomic Networks
  • Gene expression and cancer classification
  • Biomedical Text Mining and Ontologies
  • Genomics and Phylogenetic Studies
  • Cell Image Analysis Techniques
  • Genomics and Rare Diseases
  • Environmental Monitoring and Data Management
  • Advanced Biosensing Techniques and Applications
  • Biomedical and Engineering Education
  • Genetics, Bioinformatics, and Biomedical Research
  • RNA and protein synthesis mechanisms
  • Advanced Proteomics Techniques and Applications

University of Cambridge
2014-2022

Bridge University
2014

Czech Academy of Sciences, Biology Centre
2014

BioJS is a community-based standard and repository of functional components to represent biological information on the web. The development has been prompted by growing need for bioinformatics visualisation tools be easily shared, reused discovered. Its modular architecture makes it easy users find specific functionality without needing know how built, while can extended or created implementing new functionality. community developers currently provides range that open access freely...

10.12688/f1000research.3-55.v1 preprint EN cc-by F1000Research 2014-02-13

The DAGViewer BioJS component is a reusable JavaScript made available as part of the project and intended to be used display graphs structured data, with particular emphasis on Directed Acyclic Graphs (DAGs). It enables users embed representations such ontologies or phylogenetic trees, in hyper-text documents (HTML). This generic, since it capable (given appropriate configuration) displaying any kind data that organised graph. features this which are useful for examining filtering large...

10.12688/f1000research.3-51.v1 preprint EN cc-by F1000Research 2014-02-13

Abstract HumanMine (www.humanmine.org) is an integrated database of human genomics and proteomics data that provides a powerful interface to support sophisticated exploration analysis compiled from experimental, computational curated sources. Built using the InterMine integration platform, includes genes, proteins, pathways, expression levels, Single nucleotide polymorphism (SNP), diseases more, into single searchable database. promotes integrative analysis, approach in modern biology allows...

10.1093/database/baac054 article EN cc-by-nc Database 2022-01-01

Abstract HumanMine ( www.humanmine.org ) is an integrated database of human genomics and proteomics data that provides a powerful interface to support sophisticated exploration analysis compiled from experimental, computational curated sources. Built using the InterMine integration platform, includes genes, proteins, pathways, expression levels, SNPs, diseases more, into single searchable database. promotes integrative analysis, approach in modern biology allows many sources evidence be...

10.1101/2022.05.11.491545 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2022-05-12

<ns4:p><ns4:bold>Summary: </ns4:bold>The InterMineTable component is a reusable JavaScript as part of the BioJS project. It enables users to embed powerful table-based query facilities in their websites with access genomic data-warehouses such <ns4:ext-link xmlns:ns3="http://www.w3.org/1999/xlink" ext-link-type="uri" ns3:href="http://www.flymine.org">http://www.flymine.org</ns4:ext-link>, which allow perform flexible queries over wide range integrated data...

10.12688/f1000research.3-46.v1 preprint EN cc-by F1000Research 2014-02-13

<ns4:p><ns4:bold>Summary: </ns4:bold>The InterMineTable component is a reusable JavaScript as part of the BioJS project. It enables users to embed powerful table-based query facilities in their websites with access genomic data-warehouses such <ns4:ext-link xmlns:ns3="http://www.w3.org/1999/xlink" ext-link-type="uri" ns3:href="http://www.flymine.org">http://www.flymine.org</ns4:ext-link>, which allow perform flexible queries over wide range integrated data...

10.12688/f1000research.3-45.v1 preprint EN cc-by F1000Research 2014-02-13
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