Pedro E. Vieira

ORCID: 0000-0003-4880-3323
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About
Contact & Profiles
Research Areas
  • Environmental DNA in Biodiversity Studies
  • Identification and Quantification in Food
  • Marine Biology and Ecology Research
  • Marine Ecology and Invasive Species
  • Microbial Community Ecology and Physiology
  • Coral and Marine Ecosystems Studies
  • Marine and coastal plant biology
  • Isotope Analysis in Ecology
  • Protist diversity and phylogeny
  • Genomics and Phylogenetic Studies
  • Parasite Biology and Host Interactions
  • Scientific Computing and Data Management
  • Marine and fisheries research
  • Marine Bivalve and Aquaculture Studies
  • Genetic diversity and population structure
  • Escherichia coli research studies
  • Enterobacteriaceae and Cronobacter Research
  • Crustacean biology and ecology
  • Species Distribution and Climate Change
  • Aquatic Invertebrate Ecology and Behavior
  • Chemical Synthesis and Analysis
  • Plant and Fungal Species Descriptions
  • Antibiotic Resistance in Bacteria
  • Ecology and Vegetation Dynamics Studies
  • Marine Invertebrate Physiology and Ecology

University of Minho
2019-2024

University of Aveiro
2012-2024

Aquatic Systems (United States)
2024

Research Network (United States)
2024

Universidade Estadual Paulista (Unesp)
2022

Portuguese Sea and Atmosphere Institute
2022

University of Coimbra
2022

University of Algarve
2022

Universidad de La Laguna
2021

Bangor University
2019

Molecular data have been suggesting the existence of a complex cryptic species within taxon Perinereis cultrifera , which has not fully explored yet. In this study, we performed morphological and molecular analysis (mtCOI-5P 16S rRNA 28SD2 ) specimens from intertidal marine brackish European localities, mostly focusing on Mediterranean Sea Canary Islands. Two major phylogenetic clades with at least 18 divergent (COI 19.8; 6.4-28.5%) completely sorted lineages were uncovered based original...

10.1071/is24059 article EN Invertebrate Systematics 2025-02-20

Abstract Biodiversity studies greatly benefit from molecular tools, such as DNA metabarcoding, which provides an effective identification tool in biomonitoring and conservation programmes. The accuracy of species‐level assignment, consequent taxonomic coverage, relies on comprehensive barcode reference libraries. role these libraries is to support species identification, but accidental errors the generation barcodes may compromise their accuracy. Here, we present R‐based application,...

10.1111/1755-0998.13262 article EN Molecular Ecology Resources 2020-10-01

DNA metabarcoding provides a rapid and effective identification tool of macroinvertebrate species. The accuracy species-level assignment, consequent taxonomic coverage, relies on comprehensive barcode reference libraries, which, due to incompleteness, are currently recognized limitation for applications. In this study, we assembled library barcodes Atlantic Iberia marine species, assessed gaps in species coverage examined data ambiguities. Initially, an Iberian checklist the three dominant...

10.1016/j.rsma.2020.101307 article EN cc-by-nc-nd Regional Studies in Marine Science 2020-04-01

The introduction of non-indigenous species (NIS) is one the major threats to integrity European coastal ecosystems. DNA-based assessments have been increasingly adopted for monitoring NIS. However, accuracy taxonomic assignments largely dependent on completion and reliability DNA barcode reference libraries. As such, we aimed compile audit a library marine invertebrate NIS occurring in Europe. To do so, compiled list using three databases: Alien Species Information Network (EASIN), System...

10.3390/d15020174 article EN cc-by Diversity 2023-01-26

Abstract The north‐east Atlantic (NEA) is an important and complex biogeographic region with a very rich marine fauna. However, little known about the role of Macaronesian islands in evolutionary history diversification invertebrates NEA. Among amphipods, members family Hyalidae are particularly common abundant intertidal rocky shores In this study, we aimed to investigate genetic structure diversity seven hyalid species inhabiting Macaronesian, European Moroccan coasts, focus on...

10.1111/zsc.12339 article EN Zoologica Scripta 2019-03-10

The accuracy of specimen identification through DNA barcoding and metabarcoding relies on reference libraries containing records with reliable taxonomy sequence quality. considerable growth in barcode data requires stringent curation, especially taxonomically difficult groups such as marine invertebrates. A major effort curating the Barcode Life Data Systems (BOLD) was undertaken during 8 th International Conference (Trondheim, Norway, 2019). Major taxonomic (crustaceans, echinoderms,...

10.3897/mbmg.5.67862 article EN cc-by Metabarcoding and Metagenomics 2021-12-16

Past molecular studies using mtDNA sequences and alloenzymes signalled the existence of at least two cryptic species within Hediste diversicolor morphotype, in European coasts. However, to this day, no new descriptions have been made. In study, we identified five completely sorted lineages a multi-locus approach, including mitochondrial DNA cytochrome oxidase I gene (COI-5P) nuclear markers ITS2 rRNA 28S rRNA. The data were complemented with morphometric measurements examined through...

10.1080/14772000.2022.2116124 article EN Systematics and Biodiversity 2022-10-17

Abstract The resistance of malaria parasites to available drugs continues grow, and this makes the need for new antimalarial therapies pressing. Aminoacyl‐tRNA synthetases (ARSs) are essential enzymes well‐established antibacterial targets so constitute a promising set development antimalarials. Despite their potential as drug targets, apicoplastic ARSs remain unexplored. We have characterized lysylation system Plasmodium falciparum , designed, synthesized, tested inhibitors based on...

10.1002/cbic.201200620 article EN ChemBioChem 2013-02-27

DNA metabarcoding has the capacity to bolster current biodiversity assessment techniques, including early detection and monitoring of non-indigenous species (NIS). However, success this approach is greatly dependent on availability, taxonomic coverage reliability reference sequences in genetic databases, whose deficiencies can potentially compromise identifications at assignment step. In study we assessed lacunae availability sequence data from four barcodes (COI, 18S, rbcL matK) for NIS...

10.3897/mbmg.4.55162 article EN cc-by Metabarcoding and Metagenomics 2020-08-12

DNA metabarcoding has great potential to improve marine biomonitoring programs by providing a rapid and accurate assessment of species composition in zoobenthic communities. However, some methodological improvements are still required, especially regarding failed detections, primers efficiency incompleteness databases. Here we assessed the two different marker loci (COI 18S) three primer pairs detection through macrozoobenthic communities colonizing types artificial substrates (slate, PVC...

10.3897/mbmg.5.70063 article EN cc-by Metabarcoding and Metagenomics 2021-12-29

Abstract Aim DNA metabarcoding has great potential to improve biomonitoring in island's marine ecosystems, which are highly vulnerable global change and non‐indigenous species (NIS) introductions. However, the depth accuracy of taxonomic identifications mainly dependent on reference libraries containing representative reliable sequences for targeted species. In this study, we evaluated gaps availability their macroinvertebrates inhabiting Macaronesia's shallow habitats. Location Macaronesia...

10.1111/ddi.13305 article EN Diversity and Distributions 2021-06-18

Abstract Diversification and speciation of terrestrial organisms are anticipated in oceanic islands such as Macaronesia, a group Atlantic that have remained unconnected to continental landmasses. Hitherto, the diversification marine islands, especially those with low vagility, has received little direct empirical analysis using molecular markers. Here, we focus on case study, through applying multilocus approach investigate diversity evolution lacks planktonic larval stage, isopod genus...

10.1111/mec.15052 article EN Molecular Ecology 2019-02-15

Abstract We report on two new lineages of the Eumida sanguinea complex from Great Britain and describe one them as a species using multilocus approach, including mitochondrial DNA COI‐5P nuclear markers ITS (ITS1, 5.8S rRNA ITS2) 28S rRNA. The molecular analysis placed mackiei sp. nov. in monophyletic clade with 19.1% (COI), 10.1% (ITS) 1.7% (28S) mean distance to its nearest neighbour. Molecular diagnoses were also applied nine within E. complex. This was complemented morphometric data...

10.1111/zsc.12397 article EN Zoologica Scripta 2019-12-09

Morphologically similar species are often overlooked but molecular techniques have been effective in signalling potential hidden diversity, boosting the documentation of unique evolutionary lineages and ecological diversity. Platynereis dumerilii massiliensis part a recognised complex, where differences reproductive biology mainly highlighted to date. Analyses DNA sequence data (COI, 16S rDNA D2 region 28S rDNA) populations apparent morphotype P. obtained from broader sampling area along...

10.1071/is21084 article EN Invertebrate Systematics 2022-11-16

The polychaete genus Laeonereis (Annelida, Nereididae) occurs over a broad geographic range and extends nearly across the entire Atlantic coast of America, from USA to Uruguay. Despite research efforts clarify its diversity systematics, mostly by morphological ecological evidence, there is still uncertainty, mainly concerning species culveri , which constitutes an old notorious case taxonomic ambiguity. Here, we revised molecular distribution based on multi-locus approach, including DNA...

10.7717/peerj.11364 article EN cc-by PeerJ 2021-05-27

Sphaeromatid isopods, such as Dynamene, are common and abundant members of the invertebrate fauna littoral shallow sublittoral substrates. Six species Dynamene occur in northern hemisphere. Only two exist outside this range, Australia. The distribution various NE Atlantic-Black Sea axis has been controversial due to difficulty identification different species. This led inaccurate records their distribution, ultimately generating uncertain or faulty assessments on biodiversity these habitats....

10.3897/zookeys.635.10240 article EN cc-by ZooKeys 2016-11-23

eDNA metabarcoding has been increasingly employed in the monitoring of marine invertebrate non-indigenous species (NIS), particular using filtered seawater. However, comprehensive detection all NIS may require a diversity sampling substrates. To assess effectiveness 5 sample types (hard and artificial substrates, water, zooplankton) on recovery invertebrates' diversity, two marinas were monitored over three time points, COI 18S rRNA genes as DNA markers. We detected total 628 23 NIS, with...

10.1016/j.marenvres.2024.106660 article EN cc-by Marine Environmental Research 2024-07-30
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