A5000989769- Gut microbiota and health
- Genomics and Phylogenetic Studies
- Microbial Community Ecology and Physiology
- Distributed and Parallel Computing Systems
- Plant Pathogens and Fungal Diseases
- Probiotics and Fermented Foods
- Species Distribution and Climate Change
- Tryptophan and brain disorders
- Climate change and permafrost
- Tracheal and airway disorders
- Urban Heat Island Mitigation
- Cancer Genomics and Diagnostics
- Plant Ecology and Soil Science
- Pancreatic and Hepatic Oncology Research
- Chronic Obstructive Pulmonary Disease (COPD) Research
- Antifungal resistance and susceptibility
- Radiomics and Machine Learning in Medical Imaging
- Bacterial Identification and Susceptibility Testing
- Scientific Research and Discoveries
- CNS Lymphoma Diagnosis and Treatment
- Geophysics and Gravity Measurements
- Lymphoma Diagnosis and Treatment
- Mycorrhizal Fungi and Plant Interactions
Max Planck Institute for Biogeochemistry
2024
Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI)
2019-2024
Abstract Background Antibiotic treatment has a well-established detrimental effect on the gut bacterial composition, but effects fungal community are less clear. Bacteria in lumen of gastrointestinal tract may limit colonization and invasion. drugs targeting bacteria therefore seen as an important risk factor for infections induced allergies. However, antibiotic bacterial-fungal interactions, including disruption resilience compositions, were not investigated humans. We analysed stool...
Environmental change, coupled with alteration in human lifestyles, is profoundly impacting the microbial communities critical to health of Earth and its inhabitants. To identify bacteria fungi that are resistant susceptible habitat we analyze thousands genera detected 1,580 host, soil, aquatic samples. This large-scale analysis identifies 48 bacterial 4 fungal abundant across three biomes, demonstrating fitness diverse environmental conditions. Samples containing these generalists have...
Abstract Candida albicans is a leading cause of life-threatening hospital-acquired infections and can lead to Candidemia with sepsis-like symptoms high mortality rates. We reconstructed genome-scale C. metabolic model investigate bacterial-fungal interactions in the gut as determinants fungal abundance. optimized predictive capacity our using wild type mutant growth data used it for silico interaction predictions. Our analysis more than 900 paired fungal–bacterial models predicted key...
Changing the properties of land surface may be one most direct ways to modulate local (and possibly non-local) land-atmosphere interactions, which in turn is great interest for designing proper land-based climate mitigation and adaptation strategies. When we change type vegetation across a landscape, biophysical that will change, potentially altering both radiative non-radiative fluxes. Land temperature (LST), as measured from remote sensing satellites, provides useful diagnostic,...
Trillions of microbes representing all kingdoms life are resident in, and on, humans holding essential roles for the host development physiology. The last decade over a dozen online tools servers, accessible via public domain, have been developed analysis bacterial sequences; however, fungi is still in its infancy. Here, we present web server dedicated to comprehensive human mycobiome (i) translating raw sequencing reads data tables high-standard figures, (ii) integrating statistical machine...
Abstract. Traditional map projections introduce distortions, especially for global data. Discrete Global Grid Systems (DGGS) offer an alternative by dividing the Earth into equal-area grid cells at different resolutions. This paper describes xdggs, a new Xarray extension that simplifies working with DGGS. Xdggs provides unified API various DGGS libraries and integrates seamlessly Pangeo ecosystem through extending widely used library to use DGGS-specific cell identifiers as index....
Climate change and human activities jeopardize ecosystems’ biodiversity, functions, services. However, biodiversity monitoring is resource-intensive unable to provide the coverage resolution necessary understand responses these drivers. Remote sensing can contribute plant status by exploiting variability of spectral imagery acquired from space platforms. Still, several gaps must yet be solved regarding what approaches, metrics, sensors, techniques reliable maps. One main challenges...
Traditional geospatial representations of the globe on a 2-dimensional plane often introduce distortions in area, distance, and angles. Discrete Global Grid Systems (DGGS) mitigate these hierarchical structure global grids. Defined by ISO standards, DGGSs serve as spatial reference systems facilitating data cube construction, enabling integration aggregation multi-resolution sources. Various tessellation schemes such hexagons triangles cater to different needs - equal optimal neighborhoods,...
Abstract Trillions of microbes representing all kingdoms life are resident in, and on, humans holding essential roles for host development physiology. The last decade over a dozen online tools servers, accessible via public domain, have been developed the analysis bacterial sequences, however, fungi is still in its infancy. Here we present web server dedicated to comprehensive human mycobiome (i) translating raw sequencing reads data tables high-standard figures; (ii) integrating statistical...
Abstract Environmental change coupled with alteration in human lifestyles are profoundly impact-ing the microbial communities that play critical roles health of Earth and its inhabitants. To identify bacteria fungi resistant susceptible to habitat changes respectively, we retrieved paired 16S ITS rRNA amplicon sequence data from 1,580 host, soil, aquatic samples explored ecological patterns thousands detected bacterial fungal genera. Through this large-scale analysis, identified 48 4 genera...