Joaquim Cesar Sousa

ORCID: 0000-0003-2338-2323
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About
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Research Areas
  • SARS-CoV-2 and COVID-19 Research
  • Plant Virus Research Studies
  • vaccines and immunoinformatics approaches
  • Virology and Viral Diseases
  • Viral Infections and Outbreaks Research
  • Retinal and Optic Conditions
  • COVID-19 epidemiological studies
  • CRISPR and Genetic Engineering
  • Ocular Diseases and Behçet’s Syndrome

Fundação Oswaldo Cruz
2022

Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has infected almost 200 million people worldwide by July 2021 and the pandemic been characterized infection waves of viral lineages showing distinct fitness profiles. The simultaneous a single individual two SARS-CoV-2 may impact COVID-19 disease progression provides window opportunity for recombination emergence new with differential phenotype. Several hundred are currently well phylogenetically defined, but main factors have...

10.1099/mgen.0.000751 article EN cc-by Microbial Genomics 2022-03-01
Tiago Gräf Gonzalo Bello Felipe Gomes Naveca Marcelo Ferreira da Costa Gomes Vanessa Leiko Oikawa Cardoso and 77 more Alexandre Freitas da Silva Filipe Zimmer Dezordi Mirleide Cordeiro dos Santos Mauro de Medeiros Oliveira Érika Lopes Rocha Batista Alessandro Leonardo Álvares Magalhães Fernando Vinhal Fábio Miyajima Helisson Faoro Ricardo Khouri Gabriel Luz Wallau Edson Delatorre Marilda Mendonça Siqueira Paola Cristina Resende Tirza Mattos Valdinete Alves do Nascimento Victor Costa de Souza André de Lima Guerra Corado Fernanda Nascimento George Silva Matilde Mejía Maria Júlia Brandão Ágatha Costa Karina Pessoa Michele Silva de Jesus Luciana Fé Gonçalves Cristiano Fernandes Valnete Andrade Luana Soares Barbagelata Ana Cecília Ribeiro Cruz Andréa Ferreira da Costa Lindomar dos Anjos Silva Jucimária Dantas Galvão Anderson Brandão Leite Felicidade Mota Pereira Thaís De Oliveira Costa Joaquim Cesar Sousa Lídio Gonçãlves Lima Neto Haline Barroso Dalane Loudal Florentino Teixeira João Felipe Bezerra Cássia Docena Raul Emídio de Lima Lílian Caroliny Amorim Silva Gustavo Barbosa de Lima Laís Ceschini Machado Matheus Filgueira Bezerra Marcelo Henrique Santos Paiva Maria Eduarda Pessoa Lopes Dantas Raíssa Liane Do Nascimento Pereira Josélio Maria Galvão de Araújo Cliomar A. Santos Rodrigo Ribeiro‐Rodrigues André Felipe Leal Bernardes Felipe Campos de Melo Iani Beatriz Grinsztejn Valdiléa G. Veloso Patrícia Brasil Anna Carolina Dias Paixão Luciana Appolinario Renata Serrano Lopes Fernando Couto Motta Alice Sampaio Barreto da Rocha Tainá Moreira Martins Venas Elisa Cavalcante Pereira Andréa Cony Cavalcanti Leonardo da Costa Bastos Luís Fernando de Macedo Brígido Mauro de Medeiros Oliveira Michelle Orane Schemberger Andréia Akemi Suzukawa Irina Nastassja Riediger Maria do Carmo Debur Richard Steiner Salvato Tatiana Schäffer Gregianini Darcita Büerger Rovaris Sandra Bianchini Fernandes

The COVID-19 epidemic in Brazil experienced two major lineage replacements until mid-2021. first was driven by P.2, late 2020, and the second Gamma, early 2021. To understand how these SARS-CoV-2 lineages spread Brazil, we analyzed 11,724 genomes collected throughout country between September 2020 April Our findings indicate that P.2 probably emerged July Rio de Janeiro state Gamma November Amazonas state. Both states were main hubs of viral disseminations to other Brazilian locations. We...

10.1016/j.isci.2022.104156 article EN cc-by-nc-nd iScience 2022-03-26
Ighor Arantes Felipe Gomes Naveca Tiago Gräf Fábio Miyajima Helisson Faoro and 95 more Gabriel Luz Wallau Edson Delatorre Luciana Appolinario Elisa Cavalcante Pereira Tainá Moreira Martins Venas Alice Sampaio Barreto da Rocha Renata Serrano Lopes Marilda Mendonça Siqueira Gonzalo Bello Paola Cristina Resende Carlos Leonardo Araújo Cleber Furtado Akesenen Fernando Braga Stehling Dias Igor Oliveira Duarte Jamille Mendes Bezerra Joaquim Cesar Sousa Pedro Miguel Carneiro Jerônimo Suzana Almeida Porto Thaís de Oliveira Costa Thais Ferreira de Oliveira Ticiane Cavalcante de Souza Veridiana Pessoa Miyajima Acacia Lourenço Francisco Nasr Ana Carolina De la Vechia Rosana Aparecida Piler Tatiane Motta Huggler Cristiano Fernandes Marcelo Ferreira da Costa Gomes Adriano Abbud Katia Oliveira Correa Alexandre Freitas da Silva Antônio Marinho da Silva Neto Cássia Docena Filipe Zimmer Dezordi Gustavo Barbosa de Lima Laís Ceschini Machado Lílian Caroliny Amorim Silva Marcelo Henrique Santos Paiva Matheus Filgueira Bezerra Raul Emídio de Lima Andréia Akemi Suzukawa Mauro de Medeiros Oliveira Michelle Orane Schemberger Beatriz Grinsztejn Patrícia Brasil Valdiléa G. Veloso Felicidade Mota Pereira Dalane Loudal Florentino Teixeira Haline Barroso Anderson Brandão Leite Vinicius Lemes da Silva André Felipe Leal Bernardes Felipe Campos de Melo Iani Irina Nastassja Riediger Maria do Carmo Debur Themis Rocha Andreia Santos Costa Lindomar dos Anjos Silva Tirza Mattos Ana Barjud Marques Maximo Liana Perdigão Mello Vânia Angélica Feitosa Viana Rodrigo Ribeiro Rodrigues Darcita Büerger Rovaris Sandra Bianchini Fernandes Lídio Gonçãlves Lima Neto Valnete Andrade Andréa Cony Cavalcanti Richard Steiner Salvato Tatiana Schäffer Gregianini Jucimária Dantas Galvão Ágatha Costa André de Lima Guerra Corado Fernanda Nascimento George Silva Karina Pessoa Luciana Fé Gonçalves Maria Júlia Brandão Matilde Mejía Michele Silva de Jesus Valdinete Alves do Nascimento Victor Costa de Souza Bruna Mendonça da Silva Fernando Couto Motta Jéssica de Macedo Carvalho Larissa Macedo Pinto Fernando Vinhal Isabela de Lucena Heráclio Morgana de Freitas Caraciolo Roberta Mendes Abreu Silva Silvio Rodrigues de Almeida Thayna Karoline Sousa Silva Alessandro Álvares Magalhães Érika Lopes Rocha Batista Greice Madeleine Ikeda do Carmo Janaína Sallas Walquíria Aparecida Ferreira de Almeida

The SARS-CoV-2 variant of concern (VOC) Delta was first detected in India October 2020. imported cases the Brazil were identified April 2021 southern region, followed by more different regions during following months. By early September 2021, already dominant southeastern (87%), (73%), and northeastern (52%) Brazilian regions. This study aimed to understand spatiotemporal dissemination dynamics Brazil. To this end, we employed a combination maximum likelihood (ML) Bayesian methods...

10.1128/spectrum.02641-21 article EN cc-by Microbiology Spectrum 2022-08-24

Abstract The SARS-CoV-2 has infected almost 200 million people worldwide by July 2021 and the pandemic been characterized infection waves of viral lineages showing distinct fitness profiles. simultaneous a single individual two provides window opportunity for recombination emergence new with differential phenotype. Several hundred are currently well but main factors have precluded major coinfection/codetection analysis thus far: i) low diversity during first year which limited identification...

10.1101/2021.09.18.21263755 preprint EN cc-by medRxiv (Cold Spring Harbor Laboratory) 2021-09-23
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