Jan de Vries

ORCID: 0000-0003-3507-5195
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About
Contact & Profiles
Research Areas
  • Photosynthetic Processes and Mechanisms
  • Protist diversity and phylogeny
  • Marine and coastal plant biology
  • Biocrusts and Microbial Ecology
  • Plant Molecular Biology Research
  • Microbial Community Ecology and Physiology
  • Plant Parasitism and Resistance
  • Historical Economic and Social Studies
  • Genomics and Phylogenetic Studies
  • Plant Diversity and Evolution
  • Algal biology and biofuel production
  • Plant Reproductive Biology
  • Plant biochemistry and biosynthesis
  • Plant Pathogens and Fungal Diseases
  • Immune Cell Function and Interaction
  • Marine Biology and Ecology Research
  • T-cell and B-cell Immunology
  • Polar Research and Ecology
  • Plant Stress Responses and Tolerance
  • Legume Nitrogen Fixing Symbiosis
  • Lipid metabolism and biosynthesis
  • Biological Control of Invasive Species
  • Immunotherapy and Immune Responses
  • Plant-Microbe Interactions and Immunity
  • Advanced Topology and Set Theory

University of Göttingen
2019-2025

Czech Academy of Sciences, Institute of Microbiology
2019-2022

University of California, Berkeley
1975-2022

Dalhousie University
2017-2020

Technische Universität Braunschweig
2019

Heinrich Heine University Düsseldorf
2013-2018

Uppsala University
2018

Amsterdam UMC Location Vrije Universiteit Amsterdam
2017

Foundation for Applied Molecular Evolution
2014

New York University Press
2013

The property of 109 CD4+ T cell clones (TCC) to induce IgE synthesis in vitro human B cells was compared with their ability produce IL-2, IL-4, and IFN-gamma supernatants (SUP) after 24-h stimulation PHA. A significant positive correlation found between the TCC or enhance spontaneous release IL-4. In contrast, there an inverse relationship helper activity IFN-gamma, whereas no statistical IL-2 observed. PHA-SUP from 71 also investigated. Twenty-nine SUP (all derived active on synthesis)...

10.4049/jimmunol.140.12.4193 article EN The Journal of Immunology 1988-06-15

Preface 1. By way of introduction Part I. Structures: 2. Space and time, structures conjunctures 3. The people 4. Money taxes, borrowing lending 5. Three questions II. Sectors: 6. Agriculture 7. Fishing 8. Industry 9. Foreign trade until the mid-seventeenth century 10. after III. Analysis: 11. City country: social structure a modern economy 12. standard living labor market 13. course economy: macroeconomic analysis 14. Postlude.

10.2307/2543707 article EN Sixteenth Century Journal 1998-09-01

Ferns are the closest sister group to all seed plants, yet little is known about their genomes other than that they generally colossal. Here, we report on of Azolla filiculoides and Salvinia cucullata (Salviniales) present evidence for episodic whole-genome duplication in ferns-one at base 'core leptosporangiates' one specific Azolla. One fern-specific gene identified, recently shown confer high insect resistance, seems have been derived from bacteria through horizontal transfer. coexists a...

10.1038/s41477-018-0188-8 article EN cc-by Nature Plants 2018-06-29

1. The transformation of consumer desire in the long eighteenth century 2. origins Industrious Revolution 3. Revolution: supply labor 4. demand 5. breadwinner-homemaker household 6. A second Revolution? Appendix I.

10.5860/choice.46-2191 article EN Choice Reviews Online 2008-12-01

Abstract Hornworts comprise a bryophyte lineage that diverged from other extant land plants >400 million years ago and bears unique biological features, including distinct sporophyte architecture, cyanobacterial symbiosis pyrenoid-based carbon-concentrating mechanism (CCM). Here, we provide three high-quality genomes of Anthoceros hornworts. Phylogenomic analyses place hornworts as sister clade to liverworts plus mosses with high support. The lack repeat-dense centromeres well...

10.1038/s41477-020-0618-2 article EN cc-by Nature Plants 2020-03-13
Giulio Formenti Kathrin Theißinger Carlos Fernandes Iliana Bista Aureliano Bombarely and 95 more Christoph Bleidorn Claúdio Ciofi Angelica Crottini José A. Godoy ‎Jacob Höglund Joanna Malukiewicz Alice Mouton Rebekah A. Oomen Sadye Paez Per J. Palsbøll Christophe Pampoulie María José Ruiz‐López Hannes Svardal Constantina Theofanopoulou Jan de Vries Ann‐Marie Waldvogel Guojie Zhang Camila J. Mazzoni Erich D. Jarvis Miklós Bálint Giulio Formenti Kathrin Theißinger Carlos Fernandes Iliana Bista Aureliano Bombarely Christoph Bleidorn Fedor Čiampor Claúdio Ciofi Angelica Crottini José A. Godoy ‎Jacob Höglund Joanna Malukiewicz Alice Mouton Rebekah A. Oomen Sadye Paez Per J. Palsbøll Christophe Pampoulie María José Ruiz‐López Hannes Svardal Constantina Theofanopoulou Jan de Vries Ann‐Marie Waldvogel Goujie Zhang Camila J. Mazzoni Erich D. Jarvis Miklós Bálint Sargis A. Aghayan Tyler Alioto Isabel Almudí Nadir Álvarez Paulo C. Alves Isabel R. Amorim Agostinho Antunes Paula Arribas Petr Baldrián Paul R. Berg Giorgio Bertorelle Astrid Böhne Andrea Bonisoli‐Alquati Ljudevit Luka Boštjančić Bastien Boussau Catherine Breton Elena Bužan Paula F. Campos Carlos Carreras L. Filipe C. Castro Luis J. Chueca Elena Conti Robert Cook‐Deegan Daniel Croll Mónica V. Cunha Frédéric Delsuc Alice B. Dennis Dimitar Dimitrov Rui Faria Adrien Favre Olivier Fédrigo Rosa Fernández Gentile Francesco Ficetola Jean‐François Flot Toni Gabaldón D. Agius Guido Roberto Gallo Alice Maria Giani M. Thomas P. Gilbert Tine Grebenc Katerina Guschanski Romain Guyot Bernhard Hausdorf Oliver Hawlitschek Peter D. Heintzman Berthold Heinze Michael Hiller Martin Husemann Alessio Iannucci

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate genomes representing global biodiversity. These provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses population functional genomics, are expected revolutionize conservation genomics.

10.1016/j.tree.2021.11.008 article EN cc-by Trends in Ecology & Evolution 2022-01-24

Significance The evolution of land plants from algae is an age-old question in biology. entire terrestrial flora stems a grade algae, the streptophyte algae. Recent phylogenomic studies have pinpointed Zygnematophyceae as modern-day algal lineage that most closely related to plant ancestor. Here, we provide insight into biology this ancestor might aided its conquest land. Specifically, uncover existence stress-signaling pathways and potential for intimate plastid-nucleus communication....

10.1073/pnas.1719230115 article EN cc-by-nc-nd Proceedings of the National Academy of Sciences 2018-03-26

Abstract Embryophytes (land plants) can be found in almost any habitat on the Earth’s surface. All of this ecologically diverse embryophytic flora arose from algae through a singular evolutionary event. Traits that were, by their nature, indispensable for conquest land plants were those are key overcoming terrestrial stressors. Not surprisingly, biology plant cells is shaped core signaling network connects environmental cues, such as stressors, to appropriate responses—which, thus, modulate...

10.1093/jxb/eraa007 article EN cc-by Journal of Experimental Botany 2020-01-07

Plant terrestrialization brought forth the land plants (embryophytes). Embryophytes account for most of biomass on and evolved from streptophyte algae in a singular event. Recent advances have unravelled first full genomes closest algal relatives plants; among such species was Mesotaenium endlicherianum. Here we used fine-combed RNA sequencing tandem with photophysiological assessment exposed to continuous range temperature light cues. Our data establish grid 42 different conditions,...

10.1038/s41477-023-01491-0 article EN cc-by Nature Plants 2023-08-28

Abstract Zygnematophyceae are the algal sisters of land plants. Here we sequenced four genomes filamentous Zygnematophyceae, including chromosome-scale assemblies for three strains Zygnema circumcarinatum . We inferred traits in ancestor and plants that might have ushered conquest by plants: expanded genes signaling cascades, environmental response, multicellular growth. share all major enzymes cell wall synthesis remodifications, gene gains shaped this toolkit. Co-expression network...

10.1038/s41588-024-01737-3 article EN cc-by Nature Genetics 2024-05-01

Streptophytes are best known as the clade containing teeming diversity of embryophytes (land plants).1Wickett N.J. Mirarab S. Nguyen N. Warnow T. Carpenter E. Matasci Ayyampalayam Barker M.S. Burleigh J.G. Gitzendanner M.A. et al.Phylotranscriptomic analysis origin and early diversification land plants.Proc. Natl. Acad. Sci. USA. 2014; 111: E4859-E4868Crossref PubMed Scopus (883) Google Scholar,2One Thousand Plant Transcriptomes InitiativeOne thousand plant transcriptomes phylogenomics green...

10.1016/j.cub.2023.12.070 article EN cc-by Current Biology 2024-01-21

The origin of land plants from algae is a long-standing question in evolutionary biology. It becoming increasingly clear that many characters were once assumed to be 'embryophyte specific' can fact found their closest algal relatives, the streptophyte algae. One such case phenylpropanoid pathway. While biochemical data indicate harbor lignin-like components, core pathway, which serves as backbone lignin biosynthesis, has been proposed have arisen at base plants. Here we revisit this...

10.1093/pcp/pcx037 article EN Plant and Cell Physiology 2017-03-09
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