Song Shi

ORCID: 0000-0003-4205-6822
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About
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Research Areas
  • Osteoarthritis Treatment and Mechanisms
  • Inflammatory mediators and NSAID effects
  • Epigenetics and DNA Methylation
  • Cytokine Signaling Pathways and Interactions
  • Reproductive Biology and Fertility
  • Autophagy in Disease and Therapy
  • Pediatric health and respiratory diseases
  • MicroRNA in disease regulation
  • PI3K/AKT/mTOR signaling in cancer
  • Cancer-related molecular mechanisms research
  • Bone Metabolism and Diseases
  • Single-cell and spatial transcriptomics
  • Genetic Syndromes and Imprinting
  • Viral Infections and Vectors
  • Genetics, Aging, and Longevity in Model Organisms
  • Rheumatoid Arthritis Research and Therapies
  • COVID-19 Impact on Reproduction
  • Circular RNAs in diseases
  • Ovarian function and disorders
  • Cancer, Lipids, and Metabolism
  • Viral Infections and Outbreaks Research
  • Gene expression and cancer classification
  • Endometrial and Cervical Cancer Treatments
  • Pain Mechanisms and Treatments
  • Heat shock proteins research

Sichuan Agricultural University
2025

Tianjin University of Science and Technology
2024

Peking University
2017-2023

Peking University Third Hospital
2021-2023

Beijing Obstetrics and Gynecology Hospital
2023

Second Hospital of Shanxi Medical University
2023

Shanxi Medical University
2023

Ministry of Education of the People's Republic of China
2023

Peking Union Medical College Hospital
2023

Chinese Academy of Medical Sciences & Peking Union Medical College
2006-2023

Lysophosphatidic acid (LPA) has diverse biological activities implicated in tumor progression, including increasing cell migration, invasion and metastasis. However, the underlying mechanisms for LPA-induced human hepatocellular carcinoma (HCC) migration are poorly understood.We sought to determine promoting effect of LPA on HCC adhesion by transwell matrix assays, respectively. Levels metalloproteinase, MMP-2 MMP- 9 from cells were assayed ELISA p38 mitogenactivated protein kinase (MAPK)...

10.5754/hge11427 article EN Hepatogastroenterology 2011-10-24

Endoplasmic reticulum (ER) stress is caused by the disturbance of ER homeostasis and leads to activation unfolded protein response (UPR), which alleviates at an early stage triggers apoptosis if fails over a prolonged timeframe. Here, we report that reticulocalbin 1 (RCN1), member CREC family, transactivated nuclear factor kappa B (NF-κB) during inhibits stress-induced apoptosis. The depletion RCN1 increases UPR drug-induced activating PRKR-like kinase-CCAAT/enhancer-binding...

10.1038/oncsis.2017.6 article EN cc-by Oncogenesis 2017-03-20

Tumor suppressor phosphatase and tensin homolog deleted on chromosome 10 (PTEN) plays a critical role in regulating cell survival, growth, proliferation by antagonizing the PI3K-AKT-mTOR pathway. The regulatory mechanism of PTEN protein is still not completely understood. Here, we found that Sirtuin 4 (SIRT4) interacts with regulates its stability. Overexpression SIRT4 cells causes down-regulation PTEN. This regulation independent acetylation ubiquitination. We further degrades through...

10.1096/fj.201801987r article EN The FASEB Journal 2019-01-16

The histone transmethylase complex comprising WD repeat domain 77 (WDR77) and protein arginine methyltransferase 5 (PRMT5) catalyzes dimethylation of H4R3 (H4R3me2) drives cancer cell proliferation migration, but its regulation is not fully understood. Here, we report that sirtuin 7 (SIRT7) directly deacetylates WDR77 this deacetylation interferes with the WDR77-PRMT5 interaction suppresses human colon HCT116 cells. Using co-expression in HEK293T cells co-immunoprecipitation assays, observed...

10.1074/jbc.ra118.003629 article EN cc-by Journal of Biological Chemistry 2018-10-03

Abstract The spermatogenesis process is complex and delicate, any error in a step may cause arrest even male infertility. According to our previous transcriptomic data, CEP70 highly expressed throughout various stages of human spermatogenesis, especially during the meiosis deformation stages. present sperm tails that it exists centrosomes as revealed by centrosome proteomics. However, specific mechanism this protein still unknown. In study, we found heterozygous site same mutation on through...

10.1038/s41419-021-03755-z article EN cc-by Cell Death and Disease 2021-05-12

Abstract Transcriptomic and epigenetic alterations during early embryo development have been proven to play essential roles in regulating the cell fate. Nowadays, advances single-cell transcriptomics epigenomics profiling techniques provide large volumes of data for understanding molecular regulatory mechanisms embryos facilitate investigation assisted reproductive technology as well preimplantation genetic testing. However, lack integrated collection unified analytic procedures greatly...

10.1093/bib/bbab208 article EN Briefings in Bioinformatics 2021-05-17

Abstract Background Osteoarthritis (OA) is a worldwide musculoskeletal disorder. However, disease-modifying therapies for OA are not available. Here, we aimed to characterize the molecular signatures of and identify novel therapeutic targets strategies improve treatment OA. Methods We collected genome-wide transcriptome data performed on 132 74 normal human cartilage or synovium tissues from 7 independent datasets. Differential gene expression analysis functional enrichment were genes...

10.1186/s13018-021-02402-9 article EN cc-by Journal of Orthopaedic Surgery and Research 2021-04-14

Abstract Background Declining oocyte quality in women with advanced age has been a major impediment to assisted reproductive treatments’ (ART) success rate. However, aging is often accompanied by diminished ovarian reserve (DOR). Cumulus cells (CCs) are known play an important role the development and maturation of oocytes, CCs actually reflects oocyte. In this study, were used investigate real reasons for decline older women. Methods Ninety-nine CC samples subdivided into 4 different groups...

10.1186/s12864-023-09728-0 article EN cc-by BMC Genomics 2023-10-31

Gametogenesis plays an important role in the reproduction and evolution of species. The transcriptomic epigenetic alterations this process can influence reproductive capacity, fertilization, embryonic development. rapidly increasing single-cell studies have provided valuable multi-omics resources. However, data from different layers sequencing platforms not been uniformed integrated, which greatly limits their use for exploring molecular mechanisms that underlie oogenesis spermatogenesis....

10.1093/gpbjnl/qzad004 article EN cc-by Genomics Proteomics & Bioinformatics 2023-12-22

Abstract Pneumonia induced by severe acute respiratory coronavirus 2 (SARS-CoV-2) via ACE2 receptor may affect many organ systems like lung, heart and kidney. An autopsy report revealed positive SARS-Cov-2 detection results in ovary, however, the developmental-stage-specific cell-type-specific risk fetal primordial germ cells (PGCs) adult women ovary remained unclear. In this study, we used single-cell RNA-sequencing (scRNA-seq) datasets spanning several developmental stages of including...

10.1101/2021.02.23.432460 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2021-02-23

Natural menopause is always accompanied by specific signs and symptoms, suggesting physiological changes in this peoriod. However, no systematic study has assessed the at molecular level ovaries during menopausal transition so far. This integrated quantitative proteome acetyl-proteome to comprehensively uncover of ovarian protein protein-acetylation profiles transitional period. The findings would provide novel insights into biology help relieve treat associated further improving women's...

10.1186/s12014-018-9214-0 article EN cc-by Clinical Proteomics 2018-11-16

Objectives Hospital staff are expected to report adverse events safety leaders and risk managers. At our institution, via an incident reporting software system, known as “RL.” These “RL reports” kept separate from patient medical records. Within the Anesthesiology Department, we noted low numbers of RL reports relative events. Anesthesiology-related were scattered within therefore difficult find. We hypothesized that compiling these in one location would increase rates allow for deeper...

10.1097/pts.0000000000001290 article EN Journal of Patient Safety 2024-10-14

Abstract Background: Osteoarthritis (OA) is a worldwide musculoskeletal disorder. However, disease-modifying therapies for OA are not available. Here, we aimed to characterize the molecular signatures of and identify novel therapeutic targets strategies improve treatment OA. Methods: We collected genome-wide transcriptome data performed on 161 88 normal human cartilage or synovium tissues from 9 independent datasets. Differential gene expression analysis functional enrichment were genes...

10.21203/rs.3.rs-47411/v1 preprint EN cc-by Research Square (Research Square) 2020-07-23

<h3>Background</h3> Systemic lupus erythematosus (SLE) is a chronic, systemic autoimmune disease characterized by autoantibody production and multisystem inflammation. Alpha-adrenoceptor blockers(AAB), angiotensin converting enzyme inhibitors(ACEI), beta-adrenoceptor blockers(BB) calcium channel blockers(CCB) are common antihypertensive drugs. However, data on their relative impact limited. We leveraged genetic variants mimicking AAB, ACEI, CCB BB drugs to investigate effects risk of SLE...

10.1136/annrheumdis-2023-eular.5252 article EN Annals of the Rheumatic Diseases 2023-05-30

<h3>Background</h3> Osteoarthritis (OA) is the most common degenerative joint disorder worldwide. Accumulating evidence has demonstrated associations of omega-3 and omega-6 PUFAs with disease activity inflammatory mediators OA, polyunsaturated fatty acids (PUFAs) are recognized for their anti-inflammatory properties<sup>[1]</sup>, while FAs that increased in joints OA<sup>[2]</sup>. However, causal links on risk OA remains inconclusive. <h3>Objectives</h3> This study was conducted to...

10.1136/annrheumdis-2023-eular.4230 article EN Annals of the Rheumatic Diseases 2023-05-30

Background Rheumatoid arthritis (RA) is a chronic, systemic inflammatory disease, which characterized by synovitis and extra-articular inflammation, whose pathophysiology involves complex interplay of environmental genetic factors. The patients with RA are at higher risk morbidity mortality from cardiovascular disease. Hypertension has been reported to be the strongest factor for events in several studies [1] . Alpha-adrenoceptor blockers, Angiotensin converting enzyme inhibitors (ACEI),...

10.1136/annrheumdis-2023-eular.4804 article EN Annals of the Rheumatic Diseases 2023-05-30

Abstract Gametogenesis plays an important role in the reproduction and evolution of species. The transcriptomic epigenetic alterations this process can influence reproductive capacity, fertilization, embryonic development. rapidly increasing single-cell studies have provided valuable multi-omics resources. However, data from different layers sequencing platforms not been uniformed integrated, which greatly limits their use for exploring molecular mechanisms that underlie oogenesis...

10.1101/2023.09.05.556316 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2023-09-06
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