Ziyue Huang

ORCID: 0000-0003-4501-2868
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About
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Research Areas
  • RNA modifications and cancer
  • Circular RNAs in diseases
  • MicroRNA in disease regulation
  • Cancer-related molecular mechanisms research
  • Extracellular vesicles in disease
  • Seed Germination and Physiology
  • Ferroptosis and cancer prognosis
  • Legume Nitrogen Fixing Symbiosis
  • Cancer, Hypoxia, and Metabolism
  • Cholangiocarcinoma and Gallbladder Cancer Studies
  • Magnetic and Electromagnetic Effects
  • Ubiquitin and proteasome pathways
  • Plant-Microbe Interactions and Immunity
  • Plant tissue culture and regeneration
  • Advanced Fiber Laser Technologies
  • Nonmelanoma Skin Cancer Studies
  • Pancreatic function and diabetes
  • Pharmacological Effects of Natural Compounds
  • Pancreatic and Hepatic Oncology Research
  • Plant Molecular Biology Research
  • Plant Pathogens and Fungal Diseases
  • Agronomic Practices and Intercropping Systems
  • Cancer-related gene regulation
  • Hedgehog Signaling Pathway Studies
  • Digital Holography and Microscopy

Shanghai Ninth People's Hospital
2023-2025

Shanghai Jiao Tong University
2023-2025

Shanghai Institute of Hematology
2023-2025

Guangxi University
2021-2024

Guilin University of Electronic Technology
2024

Harbin Medical University
2021-2024

Second Affiliated Hospital of Harbin Medical University
2021-2024

Toronto Centre for Phenogenomics
2021-2022

Lunenfeld-Tanenbaum Research Institute
2021

Sichuan Normal University
2021

Summary Seeds use environmental cues to sense the seasons and their surroundings initiate life cycle of plant. The dormancy cycling underlying this process is extensively described, but molecular mechanism largely unknown. To address we selected a range representative genes from published array experiments in laboratory, investigated expression patterns seeds A rabidopsis ecotypes with contrasting cycles over an annual field. We show how mechanisms identified laboratory are coordinated...

10.1111/tpj.12186 article EN other-oa The Plant Journal 2013-04-17

Seed yield and dormancy status are key components of species fitness that influenced by the maternal environment, in particular temperature. Responses to environmental conditions can differ between ecotypes same species. Therefore, investigate effect environment on seed production, this study compared two contrasting Arabidopsis thaliana ecotypes, Cape Verdi Isle (Cvi) Burren (Bur). Cvi is adapted a hot dry climate Bur cool damp climate, they exhibit winter summer annual phenotypes,...

10.1093/aob/mcu014 article EN cc-by Annals of Botany 2014-02-25

Transposable elements constitute an important part of the genome and are essential in adaptive mechanisms. Transposition events associated with phenotypic changes occur naturally or induced insertional mutant populations. Transposon mutagenesis results multiple random insertions recovery most/all is critical for forward genetics study. Using next-generation sequencing data appropriate bioinformatics tool, it plausible to accurately identify transposon insertion sites, which could provide...

10.1186/s12859-015-0507-2 article EN cc-by BMC Bioinformatics 2015-03-04

Legume research and cultivar development are important for sustainable food production, especially of high-protein seed. Thanks to the deep-sequencing technologies, crop species have been taken front line, even without completion their genome sequences. Black-eyed pea (Vigna unguiculata) is a legume widely grown in semi-arid regions, which has high potential provide stable seed protein production broad range environments, including drought conditions. The black-eyed reference genotype used...

10.1111/tpj.13279 article EN cc-by-nc-nd The Plant Journal 2016-07-22

Abstract Seed characteristics are key components of plant fitness that influenced by temperature in their maternal environment, and will change with global warming. To study the effect such changes, Arabidopsis thaliana plants were grown to produce seeds along a uniquely designed polyethylene tunnel having thermal gradient reflecting local warming predictions. Plants therefore experienced same variations light conditions but different mean temperatures. A range seed‐related estimates...

10.1111/pce.13082 article EN Plant Cell & Environment 2017-10-18
Justine M. Chee Louise Lanoue Dave Clary Kendall Higgins Lynette Bower and 95 more Ann M. Flenniken Ruolin Guo David J. Adams Fàtima Bosch Robert E. Braun Steve D. M. Brown H.-J. Genie Chin Mary E. Dickinson Chih‐Wei Hsu Michael S. Dobbie Xiang Gao Sanjeev Galande Anne Grobler Jason D. Heaney Yann Hérault Martin Hrabě de Angelis Fabio Mammano Lauryl M. J. Nutter Helen Parkinson Chuan Qin Toshi Shiroishi Radislav Sedláček Je Kyung Seong Ying Xu Cheryl L. Ackert‐Bicknell Douglas E. Adams Anne‐Tounsia Adoum Juan Antonio Aguilar‐Pimentel Uchechukwu Akoma Dalila Ali-Hadji Oana V. Amarie Philippe André Aurélie Auburtin Chaouki Bam’Hamed Johannes Beckers Joachim Beig Zorana Berberovic Alexandr Bezginov Marie‐Christine Birling Katharina Boroviak Joanna Bottomley Antje Bürger Dirk H. Busch Natalie C. Butterfield Pilar Cacheiro Julia Calzada‐Wack Emma L. Cambridge Susan Camilleri Marie‐France Champy Heather Cater Philippe Charles Elissa J. Chesler Yi-Li Cho Audrey E. Christiansen Valentina Cipriani Nicola Cockle Gemma Codner Amie Creighton Maribelle Cruz Katharine F. Curry Abigail D’Souza Ozge Danisment Daniel Delbarre Hannah F. Dewhurst Brendan Doe Alex Dorr Florian Giesert Graham Duddy Kyle Duffin Amal El Amri Hillary Elrick Mohammad Eskandarian Martin Fray Anthony Frost Helmut Fuchs Valérie Gailus‐Durner Karen Kristine Gampe Milan Ganguly David Gannon Lillian Garrett Marina Gertsenstein Diane Gleeson Leslie O. Goodwin Jochen Graw Kristin Grimsrud Hamed Haselimashhadi Liane Hobson Andreas Hörlein Sabine M. Hölter Seung-Hyun Hong Neil Horner Amanda Trainor Ziyue Huang Coleen Kane Yulia Katsman

Abstract Background Microphthalmia, anophthalmia, and coloboma (MAC) spectrum disease encompasses a group of eye malformations which play role in childhood visual impairment. Although the predominant cause is known to be heritable nature, with 80% cases displaying loss-of-function mutations ocular developmental genes OTX2 or SOX2, genetic abnormalities underlying remaining MAC are incompletely understood. This study intended identify novel pathways required for early development....

10.1186/s12915-022-01475-0 article EN cc-by BMC Biology 2023-02-03

Abstract Seeds have evolved to be highly efficient environmental sensors that respond not only their prevailing environment, but also history, regulate dormancy and the initiation of germination. In present work we investigate combined impact a number signals (temperature, nitrate, light) during seed development on mother plant, post-shedding imbibition prolonged exposure in both dry imbibed states, simulating time soil bank. The differing response these environments was observed contrasting...

10.1017/s096025851500001x article EN cc-by Seed Science Research 2015-02-12

Purpose: To evaluate the prognosis of eyelid sebaceous carcinoma (SeC) in patients with disease stage worse than IIA. Methods: This retrospective, single-center study included 78 SeC patients. For II patients, 1:3 propensity score matching (PSM) was applied between those undergoing orbital exenteration and receiving eye-sparing treatments. Risk factors group were analyzed using Cox regression, Kaplan–Meier survival analysis assessed metastasis-free (MFS), recurrence-free (RFS),...

10.1167/iovs.66.1.40 article EN cc-by-nc-nd Investigative Ophthalmology & Visual Science 2025-01-16

Pancreatic ductal adenocarcinoma (PDAC) is an aggressive disease with a notably poor prognosis.A large number of patients PDAC develop metastases before they are diagnosed metastatic pancreatic cancer (mPDAC).For mPDAC, FOLFIRINOX or gemcitabine plus nab-paclitaxel the current first-line treatments.It important to note, however, that many will fail chemotherapy because drug resistance.Heterogeneous tumors and complex tumor microenvironments key factors.As result, clinical researchers...

10.7150/jca.89788 article EN cc-by-nc Journal of Cancer 2024-01-01

The ribophorin family (RPN) is an essential regulatory subunit of the proteasome. By influencing ubiquitin-proteasome system activity, ribophorins (RPNs) are responsible for almost all physiology and pathology processes mammalian cells. Nevertheless, little known about role RPNs in HCC. In this work, we first evaluated transcriptional levels prognostic diagnostic value based on public database. Firstly, found were surprisingly consistently upregulated HCC tissues. Moreover, RPNs' expression...

10.1155/2022/7270541 article EN Journal of Oncology 2022-08-29

We propose a robust and accurate compensation method for phase aberrations based on the iterative outlier detection refinement (ODR) rule. This does not require additional steps to select known flat region manually or by image segmentation. Based proposed method, aberration in regions of specimen can be detected refined iteratively. Then, least squares fitting carried out estimate coefficients Zernike polynomials obtain finally. Computer simulations real experiments validate feasibility...

10.1364/ol.531182 article EN Optics Letters 2024-07-24

To elucidate the biological mechanisms driving growth of various pumpkin varieties to different sizes under identical management conditions while in same field, soil microbial community structures rhizospheres giant-pumpkin (GP) and small-pumpkin (SP) were analyzed. The results revealed that a significantly higher abundance bacterial communities could be detected giant varieties, such as Gemmatimonadota, norank__f__norank__o_Gaiellales, norank__f__Gemmatimonadaceae, Bryobacter, Sphingomonas,...

10.3390/plants13162258 article EN cc-by Plants 2024-08-14

Identifying the genetic determinants of pain is a scientific imperative given magnitude global health burden that causes. Here, we report screen for nociception, performed under auspices International Mouse Phenotyping Consortium. A biased set 110 single-gene knockout mouse strains was screened 1 or more nociception and hypersensitivity assays, including chemical (formalin) mechanical thermal (von Frey filaments Hargreaves tests, respectively), with without an inflammatory agent (complete...

10.1097/j.pain.0000000000002481 article EN cc-by-nc-nd Pain 2021-09-13
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