A5048874875- Genomics and Phylogenetic Studies
- Plant Molecular Biology Research
- Plant Gene Expression Analysis
- Chromosomal and Genetic Variations
- Plant Reproductive Biology
- Genetic diversity and population structure
- Photosynthetic Processes and Mechanisms
- Identification and Quantification in Food
- Plant Taxonomy and Phylogenetics
- Aquaculture disease management and microbiota
- Plant Stress Responses and Tolerance
- Plant biochemistry and biosynthesis
- Plant tissue culture and regeneration
- Fish Ecology and Management Studies
- Fish Biology and Ecology Studies
- Lipid metabolism and biosynthesis
- Nitrogen and Sulfur Effects on Brassica
- Plant and Fungal Interactions Research
- Turtle Biology and Conservation
- Genetic and phenotypic traits in livestock
- Plant Disease Resistance and Genetics
- Botany and Plant Ecology Studies
- Polysaccharides and Plant Cell Walls
- Marine Sponges and Natural Products
- Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities
Zhejiang Ocean University
2023-2024
Ministry of Agriculture and Rural Affairs
2022-2023
Nanjing Forestry University
2021-2023
Agricultural Genomics Institute at Shenzhen
2022-2023
Chinese Academy of Agricultural Sciences
2022-2023
Abstract Cyclocarya paliurus is a relict plant species that survived the last glacial period and shows population expansion recently. Its leaves have been traditionally used to treat obesity diabetes with well-known active ingredient cyclocaric acid B. Here, we presented three C. genomes from two diploids different flower morphs one haplotype-resolved tetraploid assembly. Comparative genomic analysis revealed rounds of recent whole-genome duplication events identified 691 genes dosage...
Suaeda australis is a typical halophyte due to its high salt tolerance. The WRKY gene family plays crucial roles in responding stress, yet reports on genes S. are scarce. In this study, we identified 47 the genome. We then conducted comprehensive analyses, including investigations into their chromosomal locations, structures, phylogenetic relationships, promoter regions, conserved motifs, and expression profiles. were classified three main groups (with six subfamilies). Among nine...
Suaeda australis is one of typical halophyte owing to high levels salt tolerance. In addition, the bZIP gene family assumes pivotal functions in response stress. However, there are little reports available regarding S. australis.
Pampus belongs to the Perciformes, Stromateoidei, and Stromateidae are widely distributed throughout Indian Ocean Western Pacific. In this study, we employed next-generation sequencing generate comprehensive genomic data for punctatissimus echinogaster subsequently compared obtained information with published of argenteus . P. was identified be largest genome size (602 Mb), heterozygosity (1.38%), repetitive sequence ratio (33.06%), while similar sizes between (540 Mb) (550 were observed. A...
Cyclocarya paliurus is an important medical plant owing to the diverse bioactive compounds in its leaves. However, heterodichogamy with female and male functions segregation within protandry (PA) or protogyny (PG) may greatly affect seed quality plantations for medicinal use. To speculate on factor playing dominant role regulating C. paliurus, based phenotypic observations, our study performed a multi comparison transcriptome analysis buds (PG PA types) using RNA-seq. For bud comparisons,...
Abstract Remora albescens , also known as white suckerfish, recognized for its distinctive suction-cup attachment behavior and medicinal significance. In this study, we produced a high-quality chromosome-level genome assembly of R. through the integration 23.87 Gb PacBio long reads, 64.54 T7 short 88.63 Hi-C data. Initially, constructed contig-level totaling 605.30 Mb with contig N50 23.12 Mb. Subsequently, employing technology, approximately 99.68% (603.38 Mb) was successfully assigned to...
MADS-box transcription factors (TFs) have fundamental roles in regulating floral organ formation and flowering time plants. In order to understand the function of MIKC-type family genes Cyclocarya paliurus (Batal.) Iljinskaja, we first implemented a genome-wide analysis C. paliurus. Here, phylogenetic relationships, chromosome location, conserved motif, gene structure, promoter region, expression profile were analyzed. The results showed that 45 divided into 14 subfamilies: BS (3), AGL12...
Sebastes schlegelii is one of the most commercially important marine fish in northwestern Pacific. However, little information about genome-wide genetic characteristics available for S. individuals from Bohai and Yellow Seas. In this study, a total 157,778, 174,480, 188,756 single-nucleotide polymorphisms Dalian (DL), Yantai (YT), Qingdao (QD) coastal waters China were, respectively, identified. Sixty samples (twenty per population) were clustered together, indicating shallow structures...
The construction of high-quality genomes is fundamental for molecular studies species. Currently, there are no published genome sequences within the Uranoscopidae family, and research on genomic characteristics this family lacking. In study, analyses seven species from which captured southeastern coast China were conducted using next-generation sequencing technology. results revealed that relatively similar. sizes ranged 536.00 Mb to 652.49 Mb, with repeat sequence proportions between 20.09%...
Cyclocarya paliurus (Batal) Iljinskaja is mainly used for harvesting leaves as materials tea production and ingredients the food industry. As its most important component, contents of total or specific flavonoids are supposed to vary at different ploidy levels. In present study, two levels C. study their metabolome transcriptome profiles. Though content in that were collected September (the main season) presented insignificant differences between ploidies, flavonoid glucuronides...
Abstract Cyclocarya paliurus , an endemic species in the genus Juglandaceae with character of heterodichogamy, is one triterpene-rich medicinal plants China. To uncover genetic mechanisms behind special characteristics, we sequenced genomes two diploid (protandry, PA-dip and protogyny, PG-dip) auto-tetraploid (PA-tetra) C. genomes. Based on 134.9 (~225x), 75.5 (~125x) 271.8 Gb (~226x) subreads PacBio platform sequencing data, assembled 586.62 Mb (contig N50 = 1.9 Mb), 583.45 1.4 2.38 430.9...
Abstract Background DNA methylation is one of the most abundant epigenetic modifications, which plays important roles in flower development, sex differentiation, and regulation flowering time. Its pattern affected by cytosine-5 methyltransferase (C5-MTase) demethylase (dMTase). At present, there are no reports on C5-MTase dMTase genes heterodichogamous Cyclocarya paliurus . Results In this study, 6 CpC5-MTase 3 CpdMTase were identified diploid (2n = 2 × 32) C. , while 20 13 autotetraploid 4...
<title>Abstract</title> Background <italic>Suaeda australis</italic> is one of typical halophyte owing to high levels salt tolerance. In addition, the <italic>bZIP</italic> gene family assumes pivotal functions in response stress. However, there are little reports available regarding <italic>S. australis</italic>. Results this study, we successfully screened 44 genes within genome. Subsequently, conducted an extensive analysis, encompassing investigations into chromosome location, structure,...
The classification of the Uranoscopidae species is controversial and
Effectively assessing the basic genomic information of a species is fundamental for conducting molecular research and provides foundation constructing whole-genome maps. Hapalogenys analis temperate tropical nearshore marine fish in China’s coastal waters, with significant economic value high aquaculture potential. However, differences between male female individuals this are not yet apparent. This study conducted survey analyses on H. to provide information. According K-mer analysis, genome...
Abstract Cyclocarya paliurus is a relict plant species that survived the last Glacial period and shows population expansion recently. Its leaves have been traditionally used to treat obesity diabetes with well-known active ingredient cyclocaric acid B. Here, we present three C. genomes from two diploids different flower morphs one haplotype-resolved tetraploid assembly. Comparative genomic analysis revealed rounds of recent whole-genome duplication events identified 691 genes dosage-effect...
Cyclocarya paliurus (Batal.) Iljinskaja, a monotypic species in of Juglandaceae, is regarded as one important medical plants China. In order to reveal the alterations chloroplast (cp) genome with nuclear duplication, we presented complete cp genomes C. paliurus, and firstly analyzed on basis ploidy type (tetraploid diploid paliurus). The total length tetraploid 160,938 161,105 bp, respectively. Both consist large single-copy (LSC) region (90,221 90,391 bp), small (SSC) (18,593 18,590 an pair...