A5036778527- Biomedical Text Mining and Ontologies
- Topic Modeling
- Species Distribution and Climate Change
- Service-Learning and Community Engagement
- Mobile Crowdsensing and Crowdsourcing
- Semantic Web and Ontologies
- Wikis in Education and Collaboration
- Scientific Computing and Data Management
- Social Media in Health Education
- Genetics, Bioinformatics, and Biomedical Research
- Youth Development and Social Support
- RNA and protein synthesis mechanisms
- Bioinformatics and Genomic Networks
- RNA Research and Splicing
- Network Security and Intrusion Detection
- Ethics in Clinical Research
- Molecular Biology Techniques and Applications
- Spam and Phishing Detection
- Single-cell and spatial transcriptomics
- Diverse Educational Innovations Studies
- Advanced Malware Detection Techniques
- Genomics and Rare Diseases
- Animal and Plant Science Education
- Open Source Software Innovations
Scripps Research Institute
2014-2019
Scripps Health
2012
Bennington College
2012
The Social Mediator forum was created to bridge the gaps between theory and practice of social media research development. articles are intended promote greater awareness new insights experiences in rapidly evolving domain media, some which may influence perspectives approaches more established areas human-computer interaction. Each article is made up several short contributions from people representing different on a particular topic. Previous installments this have woven together diverse...
Motivation: Molecular signatures for predicting breast cancer prognosis could greatly improve care through personalization of treatment. Computational analyses genome-wide expression datasets have identified such signatures, but these leave much to be desired in terms accuracy, reproducibility and biological interpretability. Methods that take advantage structured prior knowledge (e.g. protein interaction networks) show promise helping define better most remains unstructured. Crowdsourcing...
Biomedical literature represents one of the largest and fastest growing collections unstructured biomedical knowledge. Finding critical information buried in can be challenging. To extract from free-flowing text, researchers need to: 1. identify entities text (named entity recognition), 2. apply a standardized vocabulary to these (normalization), 3. how are related another (relationship extraction). Researchers have primarily approached extraction tasks through manual expert curation...
I. Abstract Biomedical literature represents one of the largest and fastest growing collections unstructured biomedical knowledge. Finding critical information buried in can be challenging. In order to extract from freeflowing text, researchers need to: 1. identify entities text (named entity recognition), 2. apply a standardized vocabulary these (normalization), 3. how are related another (relationship extraction). Researchers have primarily approached extraction tasks through manual expert...
Biomedical literature is growing at a rate that outpaces our ability to harness the knowledge contained therein. To mine valuable inferences from large volume of literature, many researchers use information extraction algorithms harvest in biomedical texts. Information usually accomplished via combination manual expert curation and computational methods. Advances methods depend on time-consuming generation gold standards by limited number curators. Citizen science public participation...
Games are emerging as a powerful organizational and motivational tactic throughout many areas of society. Wherever people have goal that they having trouble reaching, be it getting their chores done [1], learning all the functions Microsoft Visual studio [2], or finishing 10K [3], finding success by posing required tasks elements games. can turn small units work, alone might seem boring, into fun steps taken towards meaningful success. In doing so, sometimes dramatically increase...
RNA-mediated oligonucleotide Annealing, Selection, and Ligation (RASL-seq) is a method to measure the expression of hundreds genes in thousands samples for fraction cost competing methods. However, enzymatic inefficiencies original protocol lack open source software design analyze RASL-seq experiments have limited its widespread adoption. We recently reported an Rnl2-based (RRASL-seq) that offers improved ligation efficiency probe decoy strategy optimize sequencing usage. Here, we describe...
Citizen science is an increasingly valuable tool for both scientists and educators. For researchers, citizen a means of more quickly investigating questions which would otherwise be time-consuming costly to study. educators, offers engage students in actual research improve learning outcomes. Since most projects are usually designed with goals mind, many lack the necessary educator materials successful integration formal education (FSE) setting. In ideal world, researchers educators build...
Abstract Citizen science is the participation in scientific research by members of public, and it an increasingly valuable tool for both scientists educators. For researchers, citizen a means more quickly investigating questions which would otherwise be time-consuming costly to study. educators, offers engage students actual improve learning outcomes. Since most projects are usually designed with goals mind, many lack necessary educator materials successful integration formal education (FSE)...
Identifying concepts and relationships in biomedical text enables knowledge to be applied computational analyses. Many biological natural language process (BioNLP) projects attempt address this challenge, but the state of art BioNLP still leaves much room for improvement. Progress research depends on large, annotated corpora evaluating information extraction systems training machine learning models. Traditionally, such are created by small numbers expert annotators often working over...
Abstract Biomedical literature is growing at a rate that outpaces our ability to harness the knowledge contained therein. In order mine valuable inferences from large volume of literature, many researchers have turned information extraction algorithms harvest in biomedical texts. Information usually accomplished via combination manual expert curation and computational methods. Advances methods depends on generation gold standards by limited number curators. This process can be time consuming...
Citizen science is an increasingly valuable tool for both scientists and educators. For researchers, citizen a means of more quickly investigating questions which would otherwise be time-consuming costly to study. educators, offers engage students in actual research improve learning outcomes. Since most projects are usually designed with goals mind, many lack the necessary educator materials successful integration formal education (FSE) setting. In ideal world, researchers educators build...