Shaun P. Stice

ORCID: 0000-0001-9884-8445
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About
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Research Areas
  • Plant Pathogenic Bacteria Studies
  • Plant-Microbe Interactions and Immunity
  • Plant Disease Resistance and Genetics
  • Garlic and Onion Studies
  • Bacteriophages and microbial interactions
  • Plant Pathogens and Fungal Diseases
  • Legume Nitrogen Fixing Symbiosis
  • Molecular Biology Techniques and Applications
  • Irrigation Practices and Water Management
  • Identification and Quantification in Food
  • Salmonella and Campylobacter epidemiology
  • Genomics and Phylogenetic Studies
  • Biosensors and Analytical Detection
  • Plant Virus Research Studies
  • Biochemical and Structural Characterization

University of Georgia
2018-2024

Plant (United States)
2024

Georgia College & State University
2021

is a member of the family Enterobacteriaceae and an enigmatic plant pathogen with broad host range. Although

10.3389/fmicb.2018.00184 article EN cc-by Frontiers in Microbiology 2018-02-13

Burkholderia gladioli pv. alliicola, B. cepacia, and orbicola are common bacterial pathogens of onion. Onions produce organosulfur thiosulfinate defensive compounds after cellular decompartmentalization. Using whole-genome sequencing in silico analysis, we identified putative tolerance gene (TTG) clusters multiple onion-associated species similar to those characterized other Allium-associated endophytes pathogens. Sequence analysis revealed the presence three TTG cluster types, with both...

10.1094/mpmi-01-24-0005-r article EN cc-by-nc-nd Molecular Plant-Microbe Interactions 2024-03-15

Pantoea ananatis is a gram-negative bacterium and the primary causal agent of center rot onions in Georgia. Previous genomic studies identified two virulence gene clusters, HiVir alt, associated with rot. The cluster required to induce necrosis on onion tissues via synthesis pantaphos, (2-hydroxy[phosphono-methyl)maleate), phosphonate phytotoxin. alt aids tolerance thiosulfinates generated during tissue damage. Whole genome sequencing other species suggests that these clusters are present...

10.3389/fpls.2021.643787 article EN cc-by Frontiers in Plant Science 2021-03-10

Pantoea stewartii subsp. indologenes is a causative agent of leafspot foxtail millet and pearl millet; however, novel strains were recently identified that are pathogenic on onion. We phenotypically genotypically characterized 17 P. from onion other sources (pearl millet, guar pulse, verbena, corn). Based the host range evaluation, we propose two pathovars: pv. cepacicola nov. setariae causes symptoms Allium spp. (leek, onion, chive, Japanese bunching onion) oat. However, can only infect...

10.1094/phyto-11-20-0508-r article EN other-oa Phytopathology 2021-02-18

Pantoea ananatis, a gram negative and facultative anaerobic bacterium is member of spp. complex that causes center rot onion, which significantly affects onion yield quality. This pathogen does not have typical virulence factors like type II or III secretion systems but appears to require biosynthetic gene-cluster, HiVir/PASVIL (located chromosomally comprised 14 genes), for phosphonate secondary metabolite, the ‘ alt ’ gene cluster in plasmid 11 genes) aids bacterial colonization bulbs by...

10.3389/fmicb.2021.684756 article EN cc-by Frontiers in Microbiology 2021-08-19

ABSTRACT Phage-derived bacteriocins are highly specific and effective antimicrobial molecules, which have successfully been used as prophylactic treatments to prevent phytopathogen infections. Given the specificity of tailocins, a necessary step for broadening tailocin catalog extending applicability across systems diseases is screening new clades phytopathogens production molecules with tailocin-like killing activity. Here, we describe by sensitivity strains tailocins produced Pantoea...

10.1128/aem.00929-23 article EN Applied and Environmental Microbiology 2023-11-20

Onion center rot is caused by at least four species of genus Pantoea (P. ananatis, P. agglomerans, allii, and stewartii subsp. indologenes). Critical onion pathogenicity determinants for ananatis were recently described, but whether those are common among other onion-pathogenic remains unknown. In this work, we report in indologenes allii. We identified two distinct secondary metabolite biosynthetic gene clusters present separately different strains indologenes. One cluster similar to the...

10.1094/mpmi-08-22-0165-r article EN cc-by-nc-nd Molecular Plant-Microbe Interactions 2022-12-19

Abstract Onion ( Allium. cepa L), garlic A. sativum L.), and other members of the Allium genus produce volatile antimicrobial thiosulfinates upon cellular damage. Allicin has been known since 1950s as primary thiosulfinate compound odorant produced by garlic. However, roles endogenous production in host-bacterial pathogen interactions have not described. The bacterial onion Pantoea ananatis , which lacks both virulence Type III II Secretion Systems, induces necrotic symptoms extensive cell...

10.1101/2020.02.12.945675 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2020-02-13

Burkholderia gladioli pv. alliicola, B.cepacia, and B. orbicola are common bacterial pathogens of onion. Onions produce organosulfur thiosulfinate defensive compounds after cellular decompartmentalization. Using whole genome sequencing in silico analysis, we identified putative tolerance gene (TTG) clusters multiple onion-associated species similar to those characterized other Allium-associated endophytes pathogens. Sequence analysis revealed the presence three TTG cluster types with both...

10.1101/2024.01.24.577064 preprint EN cc-by-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-01-25

Abstract Background : Pantoea ananatis is a member of spp. complex that causes center rot onion, which significantly affects onion yield and quality. This pathogen does not have typical virulence factors like type II or III secretion systems but appears to require biosynthetic gene-cluster, HiVir/PASVIL (located chromosomally), for phosphonate secondary metabolite, the onion-virulence regions, OVR (localized on megaplasmid), pathogenicity virulence, respectively. Results: We conducted deep...

10.21203/rs.3.rs-51786/v1 preprint EN cc-by Research Square (Research Square) 2020-08-19

Abstract Phage-derived bacteriocins are highly specific and effective antimicrobial molecules which have successfully been used as prophylactic treatments to prevent phytopathogen infections. Given the specificity of tailocins, a necessary step for broadening tailocin catalog extending applicability across systems diseases is screening new clades phytopathogens production with tailocin-like killing activity. Here, we describe by sensitivity strains tailocins produced Pantoea ananatis...

10.1101/2023.05.07.539753 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-05-07

Abstract Pantoea ananatis is a member of spp. complex that causes center rot onion, which significantly affects onion yield and quality. This pathogen does not have typical virulence factors like type II or III secretion systems but appears to require biosynthetic gene-cluster, HiVir/PASVIL (located chromosomally), for phosphonate secondary metabolite, the onion-virulence regions, OVR (localized on megaplasmid), pathogenicity virulence, respectively. We conducted deep pan-genome-wide...

10.1101/2020.07.24.219337 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2020-07-24

Pantoea ananatis is a member of species complex that causes center rot bulb onions (A. cepa) and also infects other Allium crops like leeks (Allium porrum), chives schoenoprasum), bunching onion or Welsh fistulosum), garlic sativum). This pathogen relies on chromosomal phosphonate biosynthetic gene cluster (HiVir) plasmid-borne thiosulfinate tolerance (alt) for pathogenicity virulence, respectively. However, virulence factors associated with remain unknown. We used phenotype-dependent...

10.3389/fmicb.2022.1094155 article EN cc-by Frontiers in Microbiology 2023-02-02

Abstract Background The PathogenDx DetectX Combined method is a certified Performance Tested MethodSM (012201) that enrichment-free and utilizes DNA microarray-based end point PCR for the simultaneous detection of Aspergillus (A. flavus, A. fumigatus, niger, terreus), Salmonella spp., broad range Shiga toxin-producing Esherichia coli (STEC) from hemp cannabis flower, edibles, concentrates. Objective This study aimed to compare four AOAC INTERNATIONAL molecular methods utilize enrichment...

10.1093/jaoacint/qsad027 article EN cc-by Journal of AOAC International 2023-02-23

Abstract Pantoea ananatis is a gram-negative bacterium and the primary causal agent of center rot onions in Georgia. Previous genomic studies identified two virulence gene clusters, HiVir alt , associated with rot. The cluster required to induce necrosis on onion tissues via synthesis predicted small molecule toxin. aids tolerance thiosulfinates generated during tissue damage. Whole genome sequencing other species suggest that these clusters are present outside P. . To assess distribution...

10.1101/2020.12.18.423501 preprint EN cc-by-nc bioRxiv (Cold Spring Harbor Laboratory) 2020-12-19

Abstract Onion center rot is caused by at least four species of Pantoea ( P. ananatis, agglomerans, allii, and stewartii subsp. indologenes ). Critical onion pathogenicity determinants for ananatis were recently described but whether those are common among other onion-pathogenic remains unknown. In this work, we report in allii . We identified two distinct secondary metabolite biosynthetic gene clusters different strains pathogenic One cluster similar to the previously HiVir phosphonate...

10.1101/2022.03.03.482764 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2022-03-03
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