Xiaoxuan Chen

ORCID: 0000-0001-9905-7514
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About
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Research Areas
  • Gut microbiota and health
  • RNA modifications and cancer
  • Cleft Lip and Palate Research
  • Diet and metabolism studies
  • Craniofacial Disorders and Treatments
  • MicroRNA in disease regulation
  • Cancer-related molecular mechanisms research
  • Single-cell and spatial transcriptomics
  • Cancer-related gene regulation
  • Circular RNAs in diseases
  • Ubiquitin and proteasome pathways
  • Tracheal and airway disorders
  • Gene Regulatory Network Analysis
  • Cancer-related Molecular Pathways
  • Liver Disease Diagnosis and Treatment
  • Mycorrhizal Fungi and Plant Interactions
  • Molecular Biology Techniques and Applications
  • Hair Growth and Disorders
  • Fungal Biology and Applications
  • Bone Metabolism and Diseases
  • Angiogenesis and VEGF in Cancer
  • Phagocytosis and Immune Regulation
  • Wnt/β-catenin signaling in development and cancer
  • Fungal and yeast genetics research
  • Advanced Sensor and Energy Harvesting Materials

Sichuan University
2021-2025

Wuhan University of Science and Technology
2024

Xiamen University
2015-2024

Zhejiang University
2016-2024

Sun Yat-sen University
2022-2023

Guangdong Medical College
2022-2023

Shandong Provincial Institute of Dermatology and Venereology
2023

Nanjing University
2021-2023

Southern Medical University
2023

Guangdong Provincial People's Hospital
2022

Gene expression has inherent stochasticity resulting from transcription's burst manners. Single-cell snapshot data can be exploited to rigorously infer transcriptional kinetics, using mathematical models as blueprints. The classical telegraph model (CTM) been widely used explain bursting with Markovian assumptions. However, growing evidence suggests that the gene-state dwell times are generally non-exponential, switching is a multi-step process in organisms. Therefore, interpretable...

10.1098/rsos.221057 article EN cc-by Royal Society Open Science 2023-04-01

Influenza is a major public health concern, and the high mortality rate largely attributed to secondary bacterial infections. There are several mechanisms through which virus increases host susceptibility colonization, but micro-environment in lower respiratory tract (LRT) of host, infected with influenza virus, unclear. To this end, we analyzed LRT microbiome, transcriptome lung metabolome bronchoalveolar lavage fluid (BALF) mice inoculated intra-nasally H1N1 simulate human influenza,...

10.3389/fmicb.2019.02491 article EN cc-by Frontiers in Microbiology 2019-11-01

To study the effects of Bacillus subtilis supplementation in a high-fat diet on gut microbiota and nonalcoholic fatty liver disease grass carp (Ctenopharyngodon idella), juveniles (60 ± 5 g) were fed three diets: (a) control (CON), (b) (HFD) (c) supplemented with B. (HFD + BS). After 8 weeks feeding, fish growth, serum biochemical indices total lipid content measured, analysis was performed using MiSeq250 high-throughput sequencing platform. The results this showed that could improve growth...

10.3390/fishes7030094 article EN cc-by Fishes 2022-04-19

With the global aging trend, number of edentulous individuals is steadily increasing. All-on-4 implant restoration can greatly recovery masticatory function in patients. This study aims to determine effect framework material and cantilever length on stress distribution components using three-dimensional finite element analysis, thereby providing clinicians with insights into design superstructures improve patient outcomes. Five models lengths 0 mm, 3 6 9 12 mm were established, selected as...

10.1186/s12903-025-05928-0 article EN cc-by-nc-nd BMC Oral Health 2025-04-12

The fungal kingdom displays an extraordinary diversity of lifestyles, developmental processes, and ecological niches. MAPK (mitogen-activated protein kinase) cascade consists interlinked MAPKKK, MAPKK, MAPK, collectively such cascades play pivotal roles in cellular regulation fungi. However, the mechanism by which evolutionarily conserved regulate diverse output responses fungi remains unknown. Here we identified full complement components from 231 species encompassing 9 phyla. Using largest...

10.1093/gbe/evw051 article EN cc-by-nc Genome Biology and Evolution 2016-03-08

Gene function verification is a crucial step in studying the molecular mechanisms regulating various plant life activities. However, stable and efficient homologous genetic transgenic system for herbaceous peonies has not been established. In this study, using virus-induced gene silencing technology (VIGS), highly transient with distinctive advantages was proposed, which only achieves true “intact-plant” infiltration but also minimizes operation. One-year-old roots of representative species,...

10.3390/ijms25084412 article EN International Journal of Molecular Sciences 2024-04-17

mRNA vaccines against cancer have advantages in safety, improved therapeutic efficacy, and large-scale production. Therefore, our purpose is to identify immune biomarkers analyze status for developing selecting appropriate patients vaccination. We downloaded clinical information RNA-seq data of 494 LUAD from TCGA. mutational was hierarchically clustered by NMF package (Version 0.23.0). DeconstructSigs 1.8.0) consistency clustering were used mutation signatures. Maftools 2.6.05) select...

10.3389/fimmu.2021.755401 article EN cc-by Frontiers in Immunology 2021-11-30

This case report describes a 28-year-old woman with Netherton syndrome who had large erythematous migratory patches serpiginous double-edged scales on her face, neck, trunk, and extremities.

10.1001/jamadermatol.2023.0561 article EN JAMA Dermatology 2023-05-10

Background: Diabetic kidney disease (DKD) becomes the leading cause of death for end-stage renal disease, whereas potential mechanism is unclear and effective therapy still rare. Our study was designed to investigate cellular Forsythiaside against DKD. Materials Methods: The targets DKD-related were obtained from databases. overlapping in these two sets regarded as alleviation DKD by Forsythiaside. diabetic podocytopathy tubulopathy also detected clarify ameliorating level. Results: results...

10.3389/fphar.2022.1096536 article EN cc-by Frontiers in Pharmacology 2023-01-13

Axitinib is one of the most potent inhibitors vascular endothelial growth factor (VEGF) receptor and shows strong antitumor activity toward various malignant tumors. However, its severe side effects affect quality life prognosis patients. Losartan, which functions as a typical angiotensin blocker, controls average arterial pressure patients with essential hypertension protects against hypertension-related secondary diseases, including proteinuria cardiovascular injury. To explore losartan on...

10.3390/molecules27092764 article EN cc-by Molecules 2022-04-26

The aim of the present study was to investigate correlation between protein expression A-kinase anchor 95 (AKAP95), cyclin D3 and AKT with pathological indicators in lung cancer tissues. Immunohistochemistry used detect levels proteins 51 tissue samples 15 pericarcinoma samples. percentage positive tissues 68.63 28.57%, respectively, difference statistically significant (P<0.01). However, not shown correlate differentiation grade, histological type or lymph node metastasis. In addition,...

10.3892/etm.2015.2637 article EN Experimental and Therapeutic Medicine 2015-07-15

Cavity expansion is a canonical problem in geotechnics, which can be described by partial differential equations (PDEs) and ordinary (ODEs). This study explores the potential of using new solver, physics-informed neural network (PINN), to calculate stress field an expanded cavity elastic elasto-plastic regimes. Whilst PINNs have emerged as effective universal function approximator for deriving solutions wide range governing PDEs/ODEs, their ability solve problems remains uncertain. A novel...

10.48550/arxiv.2407.19074 preprint EN arXiv (Cornell University) 2024-07-08

Abstract Currently, the diagnosis of malocclusion is a highly demanding process involving complicated examinations dental occlusion, which increases demand for innovative tools occlusal data monitoring. Nevertheless, continuous wireless monitoring within oral cavity challenging due to limitations in sampling and device size. In this study, by embedding high‐performance piezoelectric sensors into surfaces using flexible printed circuits, fully integrated, flexible, self‐contained transparent...

10.1002/advs.202411187 article EN cc-by Advanced Science 2024-11-19

The low survival rates, poor responses, and drug resistance of patients with melanoma make it urgent to find new therapeutic targets. This study investigated whether the circ_0084043-miR-134-5p axis regulates antitumor effect protocadherin 9 (PCDH9) in melanoma. Ectopic expression or knock down (KD) PCDH9 a lentivirus vector, we explored its effects on proliferation, invasion, apoptosis verified regulatory ras-related C3 botulinum toxin substrate 1 (RAC1), proline-rich tyrosine kinase 2...

10.3389/fonc.2022.891476 article EN cc-by Frontiers in Oncology 2022-10-25

Purpose The study aims to compare the velopharyngeal morphology of hard and soft cleft palate (HSCP) patients after Furlow Sommerlad palatoplasty. Patients methods A total 51 (20 cases in palatoplasty group, 16 group 15 normal children control group) were included our study. Velopharyngeal function speech outcomes with HSCP who had either or for repair evaluated by perceptual assessment (PSA), lateral cephalometric radiographs nasopharyngoscopy. To assess treated two techqiques, we analyzed...

10.3389/fsurg.2022.1080955 article EN cc-by Frontiers in Surgery 2023-01-06

Abstract Motivation Gene expression has inherent stochasticity resulting from transcription’s burst manners. Single-cell snapshot data can be exploited to rigorously infer transcriptional kinetics, using mathematical models as blueprints. The classical telegraph model (CTM) been widely used explain bursting with Markovian assumptions (i.e., exponentially distributed dwell time in ON and OFF states). However, growing evidence suggests that the gene-state times are nonexponential, switching is...

10.1101/2022.07.17.500373 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2022-07-18

Sepsis is a highly heterogeneous disease and major factor in increasing mortality from infection. N7-Methylguanosine (m7G) widely RNA modification eukaryotes, which involved regulation of different biological processes. Researchers have found that m7G methylation contributes to variety human diseases, but its research sepsis still limited. Here, we aim establish the molecular classification gene-related sepsis, reveal heterogeneity explore underlying mechanism. We first identified eight...

10.3389/fgene.2022.1021770 article EN cc-by Frontiers in Genetics 2022-11-24

There is no unified treatment standard for patients with extranodal NK/T-cell lymphoma (ENKTL). Cancer neoantigens are the result of somatic mutations and cancer-specific. Increased number associated anti-cancer effects. Screening out ENKTL-specific on surface cancer cells relies understanding ENKTL mutation patterns. Hence, it imperative to identify genes diagnosis, discovery tumor-specific development novel therapeutic strategies. We investigated gene signatures patients.We collected...

10.1186/s12885-021-09023-9 article EN cc-by BMC Cancer 2021-12-06
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