Jonathan Chien

ORCID: 0000-0002-0140-5005
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About
Contact & Profiles
Research Areas
  • Neural dynamics and brain function
  • Circadian rhythm and melatonin
  • Memory and Neural Mechanisms
  • Diabetes and associated disorders
  • Disaster Response and Management
  • Neural and Behavioral Psychology Studies
  • COVID-19 epidemiological studies
  • Neurobiology and Insect Physiology Research
  • Neuroendocrine regulation and behavior
  • COVID-19 and Mental Health
  • SARS-CoV-2 and COVID-19 Research
  • Intensive Care Unit Cognitive Disorders
  • COVID-19 Clinical Research Studies
  • Kawasaki Disease and Coronary Complications
  • Long-Term Effects of COVID-19
  • Animal Behavior and Reproduction
  • Systemic Lupus Erythematosus Research
  • Photoreceptor and optogenetics research

New York University
2022-2024

Icahn School of Medicine at Mount Sinai
2020-2023

Allen Institute for Brain Science
2022-2023

McGill University
2022

Ryan C. Thompson Nicole W. Simons Lillian Wilkins Esther Cheng Diane M. Del Valle and 95 more Gabriel E. Hoffman Carlo Cervia Brian Fennessy Konstantinos Mouskas Nancy Francoeur Jessica Johnson Lauren Lepow Jessica Le Bérichel Christie Chang Aviva G. Beckmann Ying‐Chih Wang Kai Nie Nicholas Zaki Kevin Tuballes Vanessa Barcessat Mario A. Cedillo Dan Yuan Laura M. Huckins Panos Roussos Thomas U. Marron Charuta Agashe Priyal Agrawal Alara Akyatan Kasey Alesso-Carra Eziwoma Alibo Kelvin Alvarez Angelo Amabile Carmen Argmann Kimberly Argueta Steven Ascolillo Rasheed Bailey Craig Batchelor Noam D. Beckmann Priya Begani Dusan Bogunovic Swaroop Bose Cansu Cimen Bozkus Paloma Bravo Stacey-Ann Whittaker Brown Mark Buckup Larissa Burka Sharlene Calorossi Lena Cambron Guillermo Carbonell Gina Carrara Mario A. Cedillo Christie Chang Serena Chang Steven T. Chen Jonathan Chien Mashkura Chowdhury Jonathan Chung Phillip Comella Dana Cosgrove Francesca Cossarini Liam Cotter Arpit Dave Travis Dawson Bheesham D. Dayal Maxime Dhainaut Rebecca Dornfeld Katie Dul Melody Eaton Nissan Eber Cordelia Elaiho Ethan Ellis Frank Fabris Jeremiah J. Faith Dominique Falci Susie Feng Marie Fernandes Nataly Fishman Nancy Francoeur Sandeep Gangadharan Daniel Geanon Bruce D. Gelb Benjamin S. Glicksberg Sacha Gnjatic Edgar Gonzalez‐Kozlova Joanna Grabowska Gavin Gyimesi Maha Hamdani Diana Handler Jocelyn Harris Matthew Hartnett Sandra Hatem Manon Herbinet Elva Herrera Arielle Hochman Gabriel E. Hoffman J.L. Hook Laila Horta Étienne Humblin Suraj K. Jaladanki Hajra Jamal

Abstract Post-acute sequelae of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection are debilitating, clinically heterogeneous and unknown molecular etiology. A transcriptome-wide investigation was performed in 165 acutely infected hospitalized individuals who were followed into the post-acute period. Distinct gene expression signatures already present whole blood during infection, with innate adaptive immune cells implicated different symptoms. Two clusters exhibited...

10.1038/s41591-022-02107-4 article EN cc-by Nature Medicine 2022-12-08

Multisystem inflammatory syndrome in children (MIS-C) presents with fever, inflammation and pathology of multiple organs individuals under 21 years age the weeks following severe acute respiratory coronavirus 2 (SARS-CoV-2) infection. Although an autoimmune pathogenesis has been proposed, genes, pathways cell types causal to this new disease remain unknown. Here we perform RNA sequencing blood from patients MIS-C controls find disease-associated genes clustered a co-expression module annotated CD56

10.1038/s41467-021-24981-1 article EN cc-by Nature Communications 2021-08-11
Alexander W. Charney Nicole W. Simons Konstantinos Mouskas Lauren Lepow Esther Cheng and 95 more Jessica Le Bérichel Christie Chang Robert Marvin Diane M. Del Valle Sharlene Calorossi Alona Lansky Laura Walker Manishkumar Patel Hui Xie Nancy Yi Alex W. Yu Gurpawan Kang Anthony Mendoza Lora E. Liharska Emily Moya Matthew Hartnett Sandra Hatem Lillian Wilkins Melody Eaton Hajra Jamal Kevin Tuballes Steven T. Chen Alexandra Tabachnikova Jonathan H. Chung Jocelyn Harris Craig Batchelor Jose Lacunza Mahlet Yishak Kimberly Argueta Neha Karekar Brian Lee Geoffrey Kelly Daniel Geanon Diana Handler John Leech Hiyab Stefanos Travis Dawson Ieisha Scott Nancy Francoeur Jessica Johnson Akhil Vaid Benjamin S. Glicksberg Girish N. Nadkarni Eric E. Schadt Bruce D. Gelb Adeeb Rahman Robert Sebra Glenn Martin Charuta Agashe Priyal Agrawal Alara Akyatan Kasey Alesso-Carra Eziwoma Alibo Kelvin Alvarez Angelo Amabile Steven Ascolillo Rasheed Bailey Priya Begani Paloma Bravo Correra Stacey-Ann Whittaker Brown Mark Buckup Larissa Burka Lena Cambron Gina Carrara Serena Chang Jonathan Chien Mashkura Chowdhury Cansu Cimen Bozkus Phillip Comella Dana Cosgrove Francesca Cossarini Liam Cotter Arpit Dave Bheesham D. Dayal Maxime Dhainaut Rebecca Dornfeld Katie Dul Nissan Eber Cordelia Elaiho Frank Fabris Jeremiah J. Faith Dominique Falci Susie Feng Brian Fennessy Marie Fernandes Sandeep Gangadharan Joanna Grabowska Gavin Gyimesi Maha Hamdani Manon Herbinet Elva Herrera Arielle Hochman Gabriel E. Hoffman J.L. Hook Laila Horta

10.1038/s41591-020-1004-3 article EN other-oa Nature Medicine 2020-07-27
Guillaume Butler‐Laporte Edgar Gonzalez‐Kozlova Chen-Yang Su Sirui Zhou Tomoko Nakanishi and 95 more Elsa Brunet‐Ratnasingham David Morrison Lætitia Laurent Jonathan Afilalo Marc Afilalo Danielle Henry Yiheng Chen Julia Carrasco-Zanini Yossi Farjoun Maik Pietzner Nofar Kimchi Zaman Afrasiabi Nardin Rezk Meriem Bouab Louis Petitjean Charlotte Guzman Xiaoqing Xue Chris Tselios Branka Vulesevic Olumide Adeleye Tala Abdullah Noor Almamlouk Yara Moussa Chantal DeLuca Naomi Duggan Erwin Schurr Nathalie Brassard Madéleine Durand Diane M. Del Valle Ryan C. Thompson Mario A. Cedillo Eric E. Schadt Kai Nie Nicole W. Simons Konstantinos Mouskas Nicolas Zaki Manishkumar Patel Hui Xie Jocelyn Harris Robert Marvin Esther Cheng Kevin Tuballes Kimberly Argueta Ieisha Scott Charuta Agashe Priyal Agrawal Alara Akyatan Kasey Alesso-Carra Eziwoma Alibo Kelvin Alvarez Angelo Amabile Carmen Argmann Kimberly Argueta Steven Ascolillo Rasheed Bailey Craig Batchelor Noam D. Beckmann Aviva G. Beckmann Priya Begani Jessica Le Bérichel Dusan Bogunovic Swaroop Bose Cansu Cimen Bozkus Paloma Bravo Mark Buckup Larissa Burka Sharlene Calorossi Lena Cambron Guillermo Carbonell Gina Carrara Mario A. Cedillo Christie Chang Serena Chang Alexander W. Charney Steven T. Chen Esther Cheng Jonathan Chien Mashkura Chowdhury Jonathan H. Chung Phillip Comella Dana Cosgrove Francesca Cossarini Liam Cotter Arpit Dave Travis Dawson Bheesham D. Dayal Diane M. Del Valle Maxime Dhainaut Rebecca Dornfeld Katie Dul Melody Eaton Nissan Eber Cordelia Elaiho Ethan Ellis Frank Fabris

Abstract Introduction Severe COVID-19 leads to important changes in circulating immune-related proteins. To date it has been difficult understand their temporal relationship and identify cytokines that are drivers of severe outcomes underlie differences between sexes. Here, we measured 147 proteins during acute investigate these questions. Methods We protein abundances using the SOMAscan nucleic acid aptamer panel two large independent hospital-based cohorts Canada United States. fit...

10.1186/s12014-022-09371-z article EN cc-by Clinical Proteomics 2022-09-28

Summary Sexual and aggressive behaviors are two evolutionarily conserved social vital for an animal’s survival reproductive success. While increasing number of brain regions in the limbic system have been identified as functionally relevant these types behaviors, understanding how cues represented across generated via this network activity remains elusive. To gain a holistic view neural responses during we utilized multi-fiber photometry to simultaneously record Ca 2+ signals estrogen...

10.1101/2023.03.12.532199 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2023-03-13

The anterior cingulate cortex (ACC) is believed to be involved in many cognitive processes, including linking goals actions and tracking decision-relevant contextual information. ACC neurons robustly encode expected outcomes, but how this relates putative functions of remains unknown. Here, we approach question from the perspective population codes by analyzing neural spiking data ventral dorsal banks two male monkeys trained perform a stimulus-motor mapping task earn rewards or avoid...

10.1523/jneurosci.0292-23.2023 article EN cc-by-nc-sa Journal of Neuroscience 2023-07-26

Abstract Objective. Distributed hypothalamic-midbrain neural circuits help orchestrate complex behavioral responses during social interactions. Given rapid advances in optical imaging, it is a fundamental question how population-averaged activity measured by multi-fiber photometry (MFP) for calcium fluorescence signals correlates with behaviors question. This paper aims to investigate the correspondence between MFP data and behaviors. Approach: We propose state-space analysis framework...

10.1088/1741-2552/ad5702 article EN Journal of Neural Engineering 2024-06-01

Distributed hypothalamic-midbrain neural circuits orchestrate complex behavioral responses during social interactions. How population-averaged activity measured by multi-fiber photometry (MFP) for calcium fluorescence signals correlates with behaviors is a fundamental question. We propose state-space analysis framework to characterize mouse MFP data based on dynamic latent variable models, which include continuous-state linear dynamical system (LDS) and discrete-state hidden semi-Markov...

10.1101/2023.12.25.573308 preprint EN cc-by-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-12-27

Abstract The anterior cingulate cortex (ACC) is believed to be involved in many cognitive processes, including linking goals actions and tracking decision-relevant contextual information. ACC neurons robustly encode expected outcomes, but how this relates putative functions of remains unknown. Here, we approach question from the perspective population codes by analyzing neural spiking data ventral dorsal banks monkeys trained perform a stimulus-motor mapping task. We found that populations...

10.1101/2022.12.10.519901 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2022-12-11
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