A5049498098- Synthesis and characterization of novel inorganic/organometallic compounds
- Enzyme Structure and Function
- Coordination Chemistry and Organometallics
- Protein Structure and Dynamics
- Crystallization and Solubility Studies
- X-ray Diffraction in Crystallography
- Organometallic Complex Synthesis and Catalysis
- RNA and protein synthesis mechanisms
- Genomics and Phylogenetic Studies
- Organophosphorus compounds synthesis
- Machine Learning in Bioinformatics
- Nuclear Structure and Function
- Glycosylation and Glycoproteins Research
- RNA Research and Splicing
- Fluorine in Organic Chemistry
- Microbial Metabolic Engineering and Bioproduction
- Genetics, Bioinformatics, and Biomedical Research
- biodegradable polymer synthesis and properties
- Lanthanide and Transition Metal Complexes
- Advanced Proteomics Techniques and Applications
- Drug Transport and Resistance Mechanisms
- Tuberculosis Research and Epidemiology
- Bacterial Genetics and Biotechnology
- Chemical Synthesis and Characterization
- Bioinformatics and Genomic Networks
University of Münster
2020
University of California, San Francisco
2007-2018
QB3
2003-2015
Scripps Research Institute
2013
Lawrence Berkeley National Laboratory
2013
Université Paris Cité
2013
Bioengineering Center
2013
Bioinformatics Institute
2012
National University of Singapore
2012
Nanyang Technological University
2012
Abstract Functional characterization of a protein sequence is one the most frequent problems in biology. This task usually facilitated by accurate three‐dimensional (3‐D) structure studied protein. In absence an experimentally determined structure, comparative or homology modeling can sometimes provide useful 3‐D model for that related to at least known structure. Comparative predicts given (target) based primarily on its alignment more proteins (templates). The prediction process consists...
Abstract Functional characterization of a protein sequence is common goal in biology, and usually facilitated by having an accurate three‐dimensional (3‐D) structure the studied protein. In absence experimentally determined structure, comparative or homology modeling can sometimes provide useful 3‐D model for that related to at least one known structure. Comparative predicts given (target) based primarily on its alignment more proteins (templates). The prediction process consists fold...
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that relies primarily on Modeller for fold assignment, sequence-structure alignment, model building and assessment (http://salilab.org/modeller/). currently contains 10,355,444 reliable domains in 2,421,920 unique sequences. allows users to update demand, request additional sequences through interface the ModWeb server...
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that relies primarily on Modeller for fold assignment, sequence-structure alignment, model building and assessment (http://salilab.org/modeller/). currently contains almost 30 million reliable domains in 4.7 unique sequences. allows users to compute or update demand, through interface the ModWeb server...
MODBASE (http://salilab.org/modbase) is a database of annotated comparative protein structure models for all available sequences that can be matched to at least one known structure. The are calculated by MODPIPE, an automated modeling pipeline relies on MODELLER fold assignment, sequence–structure alignment, model building and assessment (http:/salilab.org/modeller). updated regularly reflect the growth in sequence databases, improvements software calculating models. currently contains 3 094...
The NCBI dbSNP database lists over 9 million single nucleotide polymorphisms (SNPs) in the human genome, but currently contains limited annotation information. SNPs that result amino acid residue changes (nsSNPs) are of critical importance variation between individuals, including disease and drug sensitivity.We have developed LS-SNP, a genomic scale software pipeline to annotate nsSNPs. LS-SNP comprehensively maps nsSNPs onto protein sequences, functional pathways comparative structure...
MODBASE (http://salilab.org/modbase) is a relational database of annotated comparative protein structure models for all available sequences matched to at least one known structure. The are calculated by MODPIPE, an automated modeling pipeline that relies on the MODELLER package fold assignment, sequence-structure alignment, model building and assessment (http:/salilab.org/modeller). uses MySQL management system flexible querying CHIMERA viewing structures (http://www.cgl.ucsf.edu/chimera/)....
MODBASE (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by MODPIPE, an automated modeling pipeline that relies primarily on MODELLER for fold assignment, sequence–structure alignment, model building and assessment (http:/salilab.org/modeller). currently contains 5 152 695 reliable domains in 1 593 209 unique sequences; only based statistically significant alignments and/or assessed to have the correct included. also...
The presence of multiple membrane-bound intracellular compartments is a major feature eukaryotic cells. Many the proteins required for formation and maintenance these share an evolutionary history. Here, we identify SEA (Seh1-associated) protein complex in yeast that contains nucleoporin Seh1 Sec13, latter subunit both nuclear pore COPII coating complex. also Npr2 Npr3 (upstream regulators TORC1 kinase) four previously uncharacterized (Sea1-Sea4). Combined computational biochemical...
MODBASE (http://guitar.rockefeller.edu/modbase) is a relational database of annotated comparative protein structure models for all available sequences matched to at least one known structure. The are calculated by MODPIPE, an automated modeling pipeline that relies on PSI-BLAST, IMPALA and MODELLER. uses the MySQL management system flexible efficient querying, MODVIEW Netscape plugin viewing manipulating multiple structures. It updated regularly reflect growth sequence databases, as well...
ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTCation-induced structural alterations in the organo alkali metal derivatives of triphenylmethane: a combined x-ray and NMR study potassium-cesium saltsDaniele Hoffmann, Walter Bauer, Paul v. R. Schleyer, Ursula Pieper, Dietmar StalkeCite this: Organometallics 1993, 12, 4, 1193–1200Publication Date (Print):April 1, 1993Publication History Published online1 May 2002Published inissue 1 April...
ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXT.eta.3 and .eta.6 Bridging cations in the N,N,N',N'',N''-pentamethyldiethylenetriamine-solvated complexes of benzylpotassium benzylrubidium: an x-ray, NMR, MO studyDaniele Hoffmann, Walter Bauer, Frank Hampel, Nicolaas J. R. van Eikema Hommes, Paul v. Schleyer, Peter Otto, Ursula Pieper, Dietmar Stalke, Dominic S. Wright, Ron SnaithCite this: Am. Chem. Soc. 1994, 116, 2, 528–536Publication Date (Print):January 1, 1994Publication History Published...
Abstract Solute carriers are eukaryotic membrane proteins that control the uptake and efflux of solutes, including essential cellular compounds, environmental toxins, therapeutic drugs. can share similar structural features despite weak sequence similarities. Identification relationships among solute is needed to enhance our ability model individual elucidate molecular mechanisms their substrate specificity transport. Here, we describe a comprehensive comparison carriers. We link using...
Abstract Summary: Accurate alignment of protein sequences and/or structures is crucial for many biological analyses, including functional annotation proteins, classifying into families, and comparative structure modeling. Described here a web interface to SALIGN, the versatile multiple sequence/structure module MODELLER. The server automatically determines best procedure based on inputs, while allowing user override default parameter values. Multiple alignments are guided by dendrogram...
X-ray structures of two enzymes in the sterol/isoprenoid biosynthesis pathway have been determined a structural genomics pilot study. Mevalonate-5-diphosphate decarboxylase (MDD) is single-domain α/β protein that catalyzes last three sequential ATP-dependent reactions which convert mevalonate to isopentenyl diphosphate. Isopentenyl disphosphate isomerase (IDI) an metalloenzyme interconversion diphosphate and dimethylallyl diphosphate, condense next step toward synthesis sterols host natural...
Good solubility and high reactivity characterize the readily accessible ytterbium benzamidinates 1 (R = H, OMe). Their strong reducing action can be exploited for synthesis of novel lanthanoid(III) complexes with "soft" chalcogenolato ligands.