A5021505215- Crop Yield and Soil Fertility
- Spectroscopy and Chemometric Analyses
- Plant responses to elevated CO2
- Leaf Properties and Growth Measurement
- Genetic Mapping and Diversity in Plants and Animals
- Species Distribution and Climate Change
- scientometrics and bibliometrics research
- Scientific Computing and Data Management
- Plant Stress Responses and Tolerance
- Research Data Management Practices
- Academic Writing and Publishing
- Plant-Microbe Interactions and Immunity
- Academic Publishing and Open Access
- Remote Sensing in Agriculture
- Statistical Methods and Bayesian Inference
- Smart Agriculture and AI
- Rice Cultivation and Yield Improvement
- Plant pathogens and resistance mechanisms
- Statistical Methods in Clinical Trials
- Biomedical Text Mining and Ontologies
- Artificial Intelligence in Healthcare and Education
- Ethics in Clinical Research
- Semantic Web and Ontologies
- Photosynthetic Processes and Mechanisms
- Social Media in Health Education
Donald Danforth Plant Science Center
2022-2025
Washington University in St. Louis
2022
Loughborough University
2019
Summary Light is essential for photosynthesis; however, excess light can increase the accumulation of photoinhibitory reactive oxygen species that reduce photosynthetic efficiency. Plants have evolved photoprotective non-photochemical quenching (NPQ) pathways to dissipate energy. In tobacco and soybean (C 3 plants), overexpression three NPQ genes, violaxanthin de-epoxidas e ( V DE), Photosystem II Subunit S P sbS), zeaxanthin epoxidase Z EP), hereafter VPZ, resulted in faster induction...
With an increasing demand for renewable fuels, bioenergy crops are being developed with high sugar content and altered cell walls to improve processing efficiency. These traits may have unintended consequences plant disease resistance. Xanthomonas vasicola pv. holcicola (Xvh), the causal agent of sorghum bacterial leaf streak, is a wide-spread pathogen. Here, we show that Xvh expresses several wall degrading enzymes (CWDEs) during infection, these required full virulence. In tolerant...
SUMMARY Water availability is a major determinant of crop production, and rising temperatures from climate change are leading to more extreme droughts. To combat the effects on yields, we need develop varieties that tolerant water‐limited conditions. We aimed determine how diverse types (winter/spring oilseed, tuberous, leafy) allopolyploid Brassica napus , species contains economically important rapeseed oilseed crop, respond prolonged water limitation. exposed plants an 80% reduction in...
Abstract The novel coronavirus, COVID-19, has sparked an outflow of scientific research seeking to understand the virus, its spread, and best practices in prevention treatment. If this international effort is going be as swift effective possible, it will need rely on a principle open science. When researchers share data, code, software generally make their work transparent allows other verify expand upon work. Furthermore, public officials informed decisions. In study, we analyzed 535...
A wide array of existing metrics quantifies a scientific paper's prominence or the author's prestige. Many who use these make assumptions that higher citation counts more public attention must indicate reliable, better quality science. While current offer valuable insight into publications, they are an inadequate proxy for measuring quality, transparency, and trustworthiness published research. Three essential elements to establishing trust in work include: paper, author, data. To address...
SUMMARY The demand for agricultural production is becoming more challenging as climate change increases global temperature and the frequency of extreme weather events. This study examines phenotypic variation 149 accessions Brachypodium distachyon under drought, heat, combination stresses. Heat alone causes largest amounts tissue damage while stresses decrease in biomass compared to other treatments. Notably, Bd21‐0, reference line B. , did not have robust growth stress conditions,...
Digital technologies have enabled vast and varied amounts of data to be captured on elite athletes. The is intended for use by athletes, coaches support team e.g. physiotherapists, sports scientists many purposes including performance development or injury prevention. However, the usefulness such digital information gathered only beneficial if deemed effective all those involved. purpose this study was investigate effectiveness technology athletes’ from athlete, coach perspective in golf....
PlantCV is a Python-based image analysis tool that lowers the barrier to entry for complex workflows in plant phenotyping. To provide support subsequent steps of measured trait data we have developed pcvr, an R package assist common phenotyping analyses. The goal pcvr make statistical analyses both easier and more consistent lower useful Bayesian methods. Here demonstrate three pieces possible covering single value analysis, longitudinal modeling, multi-value analysis.
Abstract The identification and subsequent analysis of research articles for machine learning natural language processing is a complicated task given the lack consistent article organization principles heading naming conventions across publishers journals. Given this, an understanding how organizationally follow common function their use various terms, or forms, critical step in applying techniques data information mining corpus articles. To address this need, authors developed implemented...
This study aimed to investigate the physiological and morphological responses of maize seedlings environmental stressors. High-throughput imaging analysis was used characterize stress response phenotypes 47 distinct genotypes exposed water limitation (40% field capacity), heat (38 °C), combination two stresses. RGB NIR images were collected daily, analyzed with open-source, open-development software PlantCV. Our investigation focused on quantitative measurements daily area, loss, evaluation...
This study aimed to investigate the physiological and morphological responses of maize seedlings environmental stressors. High-throughput imaging analysis was used characterize stress response phenotypes 47 distinct genotypes exposed water limitation (40% field capacity), heat (38 °C), combination two stresses. RGB NIR images were collected daily, analyzed with open-source, open-development software PlantCV. Our investigation focused on quantitative measurements daily area, loss, evaluation...
This study aimed to investigate the physiological and morphological responses of maize seedlings environmental stressors. High-throughput imaging analysis was used characterize stress response phenotypes 47 distinct genotypes exposed water limitation (40% field capacity), heat (38 °C), combination two stresses. RGB NIR images were collected daily, analyzed with open-source, open-development software PlantCV. Our investigation focused on quantitative measurements daily area, loss, evaluation...
This study aimed to investigate the physiological and morphological responses of maize seedlings environmental stressors. High-throughput imaging analysis was used characterize stress response phenotypes 47 distinct genotypes exposed water limitation (40% field capacity), heat (38 °C), combination two stresses. RGB NIR images were collected daily, analyzed with open-source, open-development software PlantCV. Our investigation focused on quantitative measurements daily area, loss, evaluation...
Making Science Better: Reproducibility, Falsifiability and the Scientific Method looks at current state of reproducibility in 2019, as well importance falsifiability research process.The analysis comes from Digital portfolio company, Ripeta, which aims to make better science easier by identifying highlighting important parts that should be transparently presented a manuscript other materials. The report addresses three areas including appropriate documentation sharing data, clear processes, code.
Earth and Space Science Open Archive This is a preprint has not been peer reviewed. ESSOAr venue for early communication or feedback before review. Data may be preliminary.Learn more about preprints preprintOpen AccessYou are viewing an older version [v2]Go to new versionBayesian hierarchical approach longitudinal high-throughput plant phenotypingAuthorsJeffreyBerryiDJoshSumneriDNoahFahlgreniDSee all authors Jeffrey BerryiDCorresponding Author• Submitting AuthorDonald Danforth Plant...
An assumption at the heart of scientific publication process is that author a manuscript is scientist. But how can we tell when that is not case? This supplements an article in The Scholarly Kitchen highlighting one case person acting as scientist and placing papers on mulitple preprint platforms.
Earth and Space Science Open Archive This is a preprint has not been peer reviewed. ESSOAr venue for early communication or feedback before review. Data may be preliminary.Learn more about preprints preprintOpen AccessYou are viewing the latest version by default [v4]Bayesian hierarchical approach to longitudinal high-throughput plant phenotypingAuthorsJoshSumneriDNoahFahlgreniDJeffreyBerryiDSee all authors Josh SumneriDWashington University School of...
Earth and Space Science Open Archive This is a preprint has not been peer reviewed. ESSOAr venue for early communication or feedback before review. Data may be preliminary.Learn more about preprints preprintOpen AccessYou are viewing an older version [v3]Go to new versionBayesian hierarchical approach longitudinal high-throughput plant phenotypingAuthorsJoshSumneriDNoahFahlgreniDJeffreyBerryiDSee all authors Josh SumneriDWashington University School of...
Earth and Space Science Open Archive This is a preprint has not been peer reviewed. ESSOAr venue for early communication or feedback before review. Data may be preliminary.Learn more about preprints preprintOpen AccessYou are viewing an older version [v1]Go to new versionBayesian hierarchical approach longitudinal high-throughput plant phenotypingAuthorsJeffreyBerryiDJoshSumneriDNoahFahlgreniDSee all authors Jeffrey BerryiDCorresponding Author• Submitting AuthorDonald Danforth Plant...