Amelia M. Randich

ORCID: 0000-0002-5172-7280
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About
Contact & Profiles
Research Areas
  • Genomics and Phylogenetic Studies
  • Bacterial Genetics and Biotechnology
  • Bacteriophages and microbial interactions
  • Solid-state spectroscopy and crystallography
  • Microbial Community Ecology and Physiology
  • Electron Spin Resonance Studies
  • Oral microbiology and periodontitis research
  • Plant tissue culture and regeneration
  • Legume Nitrogen Fixing Symbiosis
  • Enzyme Production and Characterization
  • Transgenic Plants and Applications
  • Studies on Chitinases and Chitosanases
  • Drug Transport and Resistance Mechanisms
  • Vibrio bacteria research studies
  • Hemoglobin structure and function
  • CRISPR and Genetic Engineering
  • Genetic and Kidney Cyst Diseases
  • Iron Metabolism and Disorders
  • Ion channel regulation and function
  • Nuclear Structure and Function
  • RNA and protein synthesis mechanisms
  • Conducting polymers and applications
  • Trace Elements in Health
  • Photoreceptor and optogenetics research
  • Aquaculture disease management and microbiota

University of Scranton
2021-2024

University of Missouri
2020-2022

Indiana University Bloomington
2015-2019

University of Chicago
2012-2014

University of Illinois Chicago
2013

Donald Danforth Plant Science Center
2007

The modern age of metagenomics has delivered unprecedented volumes data describing the genetic and metabolic diversity bacterial communities, but it failed to provide information about coincident cellular morphologies. Much like biosynthetic capabilities, morphology comprises a critical component fitness, molded by natural selection into many elaborate shapes observed across domain. In this essay, we discuss its implications for understanding both mechanistic adaptive basis morphogenesis. We...

10.1371/journal.pbio.1002565 article EN cc-by PLoS Biology 2016-10-03

A number of bacterial metal transporters belong to the ABC transporter family. To better understand structural determinants selectivity one such transporter, we previously determined structure periplasmic domain a zinc ZnuA, from Synechocystis 6803 and found that ZnuA binds via three histidines. Unique these transporters, has highly charged mobile loop protrudes protein in vicinity binding site had suggested might facilitate acquisition. further examine function this loop, properties two...

10.1021/bi700763w article EN Biochemistry 2007-07-01

Cyanobacteria account for a significant percentage of aquatic primary productivity even in areas where the concentrations essential micronutrients are extremely low. To better understand mechanism iron selectivity and transport, structure solute binding domain an ATP cassette transporter, FutA1, was determined presence absence iron. The ion is bound within "C-clamp" via four tyrosine one histidine residues. There extensive interactions between these ligating residues rest protein such that...

10.1074/jbc.m704136200 article EN cc-by Journal of Biological Chemistry 2007-07-12

Agrobacterium tumefaciens , a significant biotechnological tool for production of transgenic plant lines, is highly resistant to wide variety antibiotics, posing challenges various applications. One challenge the efficient elimination A. from transformed tissue without using levels antibiotics that are toxic plants.

10.1128/aem.00333-22 article EN cc-by Applied and Environmental Microbiology 2022-05-31

LytM-domain containing proteins are LAS peptidases (lysostaphin-type enzymes, D-Ala-D-Ala metallopeptidases, and sonic hedgehog) known to play diverse roles throughout the bacterial cell cycle through direct or indirect hydrolysis of wall. A subset LytM factors catalytically inactive but regulate activity other wall hydrolases classically described as separation NlpD EnvC. Here, we explore function four in alphaproteobacterial plant pathogen Agrobacterium tumefaciens . An LmdC ortholog...

10.3389/fmicb.2021.729307 article EN cc-by Frontiers in Microbiology 2021-08-18

In contrast to the majority of voltage-gated ion channels, hyperpolarization-activated channels remain closed at depolarizing potentials and are activated hyperpolarizing potentials. The basis for this reverse polarity is thought be a result differences in way voltage-sensing domain (VSD) couples pore domain. absence structural data, molecular mechanism coupling remains poorly characterized. Here we report characterization structure local dynamics activation gate (lower S6 region) MVP,...

10.1021/bi4014243 article EN publisher-specific-oa Biochemistry 2014-02-03

ABSTRACT Fretibacter rubidus is a dimorphic, prosthecate member of the family Maricaulaceae , order Caulobacterales, in class Alphaproteobacteria. Here, we report genome type strain JCM 15585 T (JC2236 ), sequenced with Oxford Nanopore Technology.

10.1128/mra.00986-24 article EN Microbiology Resource Announcements 2024-10-14

ABSTRACT Glycocaulis abyssi is a dimorphic, prosthecate member of the family Maricaulaceae , order Caulobacterales, in class Alphaproteobacteria, originally isolated from an abyssal hydrothermal vent. Here, we report complete genome sequence type strain LMG 27140 T (MCS33 ) obtained using Oxford Nanopore technology.

10.1128/mra.00984-24 article EN Microbiology Resource Announcements 2024-10-14

ABSTRACT Algimonas porphyrae is a dimorphic, prosthecate member of the family Robigintomaculaceae , order Caulobacterales, in class Alphaproteobacteria, originally isolated from red alga Porphyra yezoensis . Here we report complete genome type strain LMG 26424 T (0 C-2-2 ) obtained by sequencing with Oxford Nanopore technology.

10.1128/mra.00985-24 article EN Microbiology Resource Announcements 2024-10-21

ABSTRACT The remarkable ability of Agrobacterium tumefaciens to transfer DNA plant cells has allowed the generation important transgenic crops. One challenge A. -mediated transformation is eliminating bacteria after prevent detrimental effects plants and release engineered environment. Here we use a reverse genetics approach identify genes involved in ampicillin resistance with goal utilizing these antibiotic-sensitive strains for transformations. We show that treating C58 led increased...

10.1101/2020.09.10.292490 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2020-09-12

Summary Temperate phages constitute a potentially beneficial genetic reservoir for bacterial innovation despite being selfish entities encoding an infection cycle inherently at odds with fitness. These integrate their genomes into the host during infection, donating new, but deleterious, material: phage genome encodes toxic genes, such as lysins, that kill bacterium cycle. Remarkably, some bacteria have exploited destructive properties of genes own benefit by co-opting them toxins functions...

10.1101/418723 preprint EN cc-by-nc bioRxiv (Cold Spring Harbor Laboratory) 2018-09-16

Temperate phages constitute a potentially beneficial genetic reservoir for bacterial innovation despite being selfish entities encoding an infection cycle inherently at odds with fitness. These integrate their genomes into the host during infection, donating new, but deleterious, material: phage genome encodes toxic genes, such as lysins, that kill bacterium cycle. Remarkably, some bacteria have exploited destructive properties of genes own benefit by co-opting them toxins functions related...

10.2139/ssrn.3287789 article EN SSRN Electronic Journal 2018-01-01
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