A5020315711- Genomics and Phylogenetic Studies
- Plant Pathogenic Bacteria Studies
- Microbial infections and disease research
- Bacterial Identification and Susceptibility Testing
- Environmental DNA in Biodiversity Studies
- Aquaculture disease management and microbiota
- Advanced Data Storage Technologies
- Plant Pathogens and Fungal Diseases
- Microbial Community Ecology and Physiology
- Phytoplasmas and Hemiptera pathogens
- Microbial Metabolism and Applications
- Plant Disease Resistance and Genetics
- Algorithms and Data Compression
- Plant-Microbe Interactions and Immunity
- Cancer Genomics and Diagnostics
- GABA and Rice Research
- Cocoa and Sweet Potato Agronomy
- Epigenetics and DNA Methylation
- Yeasts and Rust Fungi Studies
- Plant Virus Research Studies
- Legume Nitrogen Fixing Symbiosis
- Plant Pathogens and Resistance
- Cancer-related molecular mechanisms research
Canadian Food Inspection Agency
2020-2024
University of Prince Edward Island
2021-2024
Ottawa Research and Development Centre
2022
Agriculture and Agri-Food Canada
2022
Hudson Institute
2019
John Wiley & Sons (United Kingdom)
2019
Guangzhou Medical University
2018
Institute of Vegetables and Flowers
2014
Chinese Academy of Agricultural Sciences
2014
With advances in next-generation sequencing, adapters attached to reads and low-quality bases directly implicitly hinder downstream analysis. For example, they can produce false-positive single nucleotide polymorphisms (SNP), generate fragmented assemblies. There is a need for fast trimming algorithm remove precisely, especially read tails with relatively low quality. Here, we present Atria, program that matches the paired finds possible overlapped regions using carefully designed byte-based...
Emerging pathogenic bacteria are an increasing threat to public health. Two recently described species of the genus Aliarcobacter, A. faecis and lanthieri, isolated from human or livestock feces, closely related Aliarcobacter zoonotic pathogens (A. cryaerophilus, skirrowii, butzleri). In this study, comparative genomics analysis was carried out examine virulence-related, including virulence, antibiotic, toxin (VAT) factors in reference strains lanthieri that may enable them become...
Clavibacter michiganensis is a Gram-stain-positive bacterium with eight subspecies, five of which have been redefined as different species on the basis their genome sequence data. On results phylogenetic analysis dnaA gene sequences, strains members genus isolated from barley grouped in separate clade other and subspecies Clavibacter. In this study, biochemical, physiological, fatty acids genetic characteristics DM1T DM3, represented isolates, were examined. multi-locus typing biochemical...
HomePlant DiseaseVol. 105, No. 12First Report of Dickeya fangzhongdai Causing Soft Rot in Orchid Canada PreviousNext DISEASE NOTE OPENOpen Access licenseFirst CanadaAiguo Zhou, Jingbai Nie, Yanli Tian, Jiacheng Chuan, Baishi Hu, Jixing Zou, and Xiang LiAiguo ZhouCharlottetown Laboratory, Canadian Food Inspection Agency, Charlottetown, PEI, CanadaSouth China Agricultural University, College Marine Sciences, Guangzhou, Guangdong, China, NieCharlottetown Canada,...
Dickeya fangzhongdai, the causal agent of bleeding canker pear, is a new member genus and only one that infects woody plants. Recent studies have reclassified several isolates as D. which were isolated from various environments, including water, Phalaenopsis sp. Aglaonema To provide genomic characterization fangzhongdai genomes strain JS5 (=China General Microbiological Culture Collection Center, CGMCC 1.15464T=DSM 101947T), along with two other isolates, LN1 QZH3, sequenced compared to...
Abstract Background As Next Generation Sequencing takes a dominant role in terms of output capacity and sequence length, adapters attached to the reads low-quality bases hinder performance downstream analysis directly implicitly, such as producing false-positive single nucleotide polymorphisms (SNP), generating fragmented assemblies. A fast trimming algorithm is demand remove precisely, especially read tails with relatively low quality. Findings We present program named Atria. Atria matches...
Introduction Candidatus Liberibacter solanacearum ( C Lso) is a regulated plant pathogen in European and some Asian countries, associated with severe diseases economically important Apiaceous Solanaceous crops, including potato, tomato, carrot. Eleven haplotypes of Lso have been identified based on the difference rRNA conserved genes host pathogenicity. Although it pathogenic to wide range plants, mechanisms response functional decline plants are not well defined. This study aims describe...
Gynura (Gynura bicolor DC.) is a perennial herbaceous plant in the family Compositae. It an important Chinese vegetable, and commonly used as herbal medicine. In 2010, severe leaf spot disease was observed on gynura grown main production areas Tong Nan County, Chongqing City, China. Some farms experienced 60% incidence. Symptoms usually began lower leaves, circular to elliptical or irregular spots with concentric rings. Individual were dark brown grayish centers, sometimes coalescing leading...
Bioinformatic approaches for the identification of microorganisms have evolved rapidly, but existing methods are time-consuming, complicated or expensive massive screening pathogens and their non-pathogenic relatives. Also, bioinformatic classifiers usually lack automatically generated performance statistics specific databases. To address this problem, we developed Clasnip ( www.clasnip.com ), an easy-to-use web-based platform classification similarity evaluation closely related at...
Abstract Colorectal cancer (CRC) commonly develops from precancerous polyps. Most polyps are benign. The current screening method involves stool tests and colonoscopy, which is an unpleasant procedure. Even though DNA-based approach has been developed, it still a clinical challenge to differentiate benign complications malignant CRC. We took the of high-throughput DNA bisulfide sequencing tissue samples identify cancer-specific methylation signatures. learned patterns by in-depth data mining...