Gilles Charmet

ORCID: 0000-0002-6618-1292
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About
Contact & Profiles
Research Areas
  • Wheat and Barley Genetics and Pathology
  • Genetics and Plant Breeding
  • Genetic Mapping and Diversity in Plants and Animals
  • Turfgrass Adaptation and Management
  • Genetic and phenotypic traits in livestock
  • Plant and fungal interactions
  • Ruminant Nutrition and Digestive Physiology
  • Plant Disease Resistance and Genetics
  • Agriculture and Rural Development Research
  • Horticultural and Viticultural Research
  • Botanical Research and Chemistry
  • Plant tissue culture and regeneration
  • Plant Pathogens and Fungal Diseases
  • Chromosomal and Genetic Variations
  • Cooperative Studies and Economics
  • Genetic and Environmental Crop Studies
  • Plant pathogens and resistance mechanisms
  • Plant Virus Research Studies
  • Agriculture, Soil, Plant Science
  • Plant Pathogens and Resistance
  • Crop Yield and Soil Fertility
  • Plant Parasitism and Resistance
  • Bioenergy crop production and management
  • Climate change impacts on agriculture
  • Gene expression and cancer classification

Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
1998-2023

Université Clermont Auvergne
2007-2023

Génétique, Diversité, Écophysiologie des Céréales
2003-2022

Institut National de la Recherche Agronomique
1992-2015

École Normale Supérieure de Lyon
2008

Département Santé des Plantes et Environnement
1985-2002

Département Biologie et Amélioration des Plantes
1988-2000

Wheat occupies a special role in global food security since, addition to providing 20% of our carbohydrates and protein, almost 25% the production is traded internationally. The importance wheat for was recognised by Chief Agricultural Scientists G20 group countries when they endorsed establishment Initiative 2011. tasked with supporting research community facilitating collaboration, information resource sharing helping build capacity address challenges facing an increasingly variable...

10.3390/agronomy12112767 article EN cc-by Agronomy 2022-11-07

Summary Infection with endophytic fungi (Acremonium spp.) was detected in wild populations of Lolium spp. from 15 20 European countries. Of 523 examined, 38% contained no infection, 48% 1–50% infection and 14% 51–100% infection. Level slightly but significantly associated abundance the sward. For data France, significant correlations were obtained between level five climate variables; highest evapotranspiration (0.66, P < 0.001) water supply deficit (‐0.66, 0.001). A model established...

10.1111/j.1744-7348.1997.tb06828.x article EN Annals of Applied Biology 1997-04-01

Genomic selection is focused on prediction of breeding values candidates by means high density markers. It relies the assumption that all quantitative trait loci (QTLs) tend to be in strong linkage disequilibrium (LD) with at least one marker. In this context, we present theoretical results regarding accuracy genomic selection, i.e., correlation between predicted and true values. Typically, for individuals (so-called test individuals), are markers, using marker effects estimated fitting a...

10.1371/journal.pone.0156086 article EN cc-by PLoS ONE 2016-06-20

Five genomic prediction models were applied to three wheat agronomic traits—grain yield, heading date and grain test weight—in breeding populations, each comprising about 350 doubled haploid or recombinant inbred lines evaluated in locations during a 3-year period. The accuracy, measured as the correlation between estimated value observed trait, was range of previously published values for yield (r = 0.2–0.5), trait with relatively low heritability. Accuracies weight, high heritabilities,...

10.1007/s11032-014-0143-y article EN cc-by Molecular Breeding 2014-07-15

We develop a simple mathematical model to explain the lower than expected levels of infection wild perennial ryegrass populations in France by endophytic Neotyphodium fungi (formerly named Acremonium). Indeed, seed-borne endophytes are considered as mutualistic symbionts, because they increase survival, growth and flowering rates their hosts, should therefore be present at very high frequencies all host populations. However, recent surveys have shown that 70% harbour such France. Moreover,...

10.2307/3546511 article EN Oikos 1997-10-01

Having a well-known history of genome duplication, rice is good model for studying structural and functional evolution paleo duplications. Improved sequence alignment criteria were used to characterize 10 major chromosome-to-chromosome duplication relationships associated with 1440 paralogous pairs, covering 47.8% the genome, 12.6% genes that are conserved within sister blocks. Using micro-array experiment, genome-wide expression map has been produced, in which 2382 show significant...

10.1093/nar/gkn1048 article EN cc-by-nc Nucleic Acids Research 2008-12-18

Cross‐validation (CRV) methods were designed to simulate genomic selection (GS) for yield in a wheat ( Triticum aestivum L.) breeding program with data of 318 genotypes grown over an 11‐yr period at six locations France. Two methods, CVSWO (cross‐validation‐specific without location as factor) and CVSW factor), included 11 folds, each comprising during specific year representing target populations, while the remaining folds other 10 yr represented training populations. These compared CVRWO...

10.3835/plantgenome2013.01.0001 article EN cc-by-nc-nd The Plant Genome 2013-03-01
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