Jochen C. Reif

ORCID: 0000-0002-6742-265X
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About
Contact & Profiles
Research Areas
  • Genetics and Plant Breeding
  • Genetic Mapping and Diversity in Plants and Animals
  • Wheat and Barley Genetics and Pathology
  • Genetic and phenotypic traits in livestock
  • Soybean genetics and cultivation
  • Legume Nitrogen Fixing Symbiosis
  • Crop Yield and Soil Fertility
  • Plant Disease Resistance and Genetics
  • Genetic diversity and population structure
  • Plant pathogens and resistance mechanisms
  • Genetic and Environmental Crop Studies
  • Nematode management and characterization studies
  • Horticultural and Viticultural Research
  • Mycotoxins in Agriculture and Food
  • Plant-Microbe Interactions and Immunity
  • Bioenergy crop production and management
  • Plant Reproductive Biology
  • Plant Pathogens and Resistance
  • Chromosomal and Genetic Variations
  • Turfgrass Adaptation and Management
  • Spectroscopy and Chemometric Analyses
  • Genetic Associations and Epidemiology
  • Plant Virus Research Studies
  • Plant tissue culture and regeneration
  • Agricultural pest management studies

Leibniz Institute of Plant Genetics and Crop Plant Research
2016-2025

Martin Luther University Halle-Wittenberg
2019-2020

Leibniz Association
2013-2015

University of Hohenheim
2004-2013

Institute of Plant Genetics, Polish Academy of Sciences
2008

Pearl millet [Cenchrus americanus (L.) Morrone] is a staple food for more than 90 million farmers in arid and semi-arid regions of sub-Saharan Africa, India South Asia. We report the ∼1.79 Gb draft whole genome sequence reference genotype Tift 23D2B1-P1-P5, which contains an estimated 38,579 genes. highlight substantial enrichment wax biosynthesis genes, may contribute to heat drought tolerance this crop. resequenced analyzed 994 pearl lines, enabling insights into population structure,...

10.1038/nbt.3943 article EN cc-by Nature Biotechnology 2017-09-18

To achieve the food and energy security of an increasing World population likely to exceed nine billion by 2050 represents a major challenge for plant breeding. Our ability measure traits under field conditions has improved little over last decades currently constitutes bottleneck in crop improvement. This work describes development tractor-pulled multi-sensor phenotyping platform small grain cereals with focus on technological system. Various optical sensors like light curtain imaging, 3D...

10.3390/s130302830 article EN cc-by Sensors 2013-02-27

Modeling epistasis in genomic selection is impeded by a high computational load. The extended best linear unbiased prediction (EG-BLUP) with an epistatic relationship matrix and the reproducing kernel Hilbert space regression (RKHS) are two attractive approaches that reduce In this study, we proved equivalence of EG-BLUP approaches, explicitly modeling effects. Moreover, have shown why RKHS model based on Gaussian captures effects among markers. Using experimental data sets wheat maize,...

10.1534/genetics.115.177907 article EN Genetics 2015-07-27

Barley, globally the fourth most important cereal, provides food and beverages for humans feed animal husbandry. Maximizing grain yield under varying climate conditions largely depends on optimal timing of flowering. Therefore, regulation flowering time is extraordinary importance to meet future demands. We developed first barley nested association mapping (NAM) population, HEB-25, by crossing 25 wild barleys with one elite cultivar, used it dissect genetic architecture time.Upon cultivation...

10.1186/s12864-015-1459-7 article EN cc-by BMC Genomics 2015-04-11

Significance Selfing species wheat are bred as pure-line varieties with stagnating yield growths. In contrast, selection gain in maize is high, owing to massive investment sustained by hybrid seed sales, coupled an efficient exploitation of vigor. We have developed a three-step strategy for establishing heterotic pattern, which was one the central unsolved challenges initiating breeding programs. The benefits our approach demonstrated using data wheat, but relevant several autogamous crops....

10.1073/pnas.1514547112 article EN Proceedings of the National Academy of Sciences 2015-12-09

Heterotic groups and patterns are of fundamental importance in hybrid breeding maize ( Zea mays L.). The major goal this study was to investigate the relationship between heterosis genetic distance determined with simple sequence repeat (SSR) markers. objectives our research were (i) compare diversity within seven tropical populations, (ii) test alternative hypotheses on panmictic midparent (PMPH) distances SSR markers, (iii) evaluate use markers for grouping germplasm establishing heterotic...

10.2135/cropsci2003.1275 article EN Crop Science 2003-07-01

A proper choice of a dissimilarity measure is important in surveys investigating genetic relationships among germplasm with molecular marker data. The objective our study was to examine 10 coefficients widely used surveys, special focus on applications plant breeding and seed banks. In particular, we (i) investigated the genetical mathematical properties these coefficients, (ii) examined consequences for different areas application banks, (iii) determined between coefficients. concepts were...

10.2135/cropsci2005.0001 article EN Crop Science 2005-01-01

Abstract Background Artificial selection played an important role in the origin of modern Glycine max cultivars from wild soybean soja . To elucidate consequences artificial accompanying domestication and improvement soybean, 25 new 30 published whole-genome re-sequencing accessions, which represent wild, domesticated landrace, Chinese elite populations were analyzed. Results A total 5,102,244 single nucleotide polymorphisms (SNPs) 707,969 insertion/deletions identified. Among SNPs detected,...

10.1186/1471-2164-14-579 article EN cc-by BMC Genomics 2013-08-28

ABSTRACT Accurate prediction of single cross performance is fundamental importance to increase the selection gain in wheat ( Triticum aestivum L.) hybrid breeding programs. We used experimental data from a commercial program as well simulated sets and evaluated prospects predicting grain yield untested hybrids applying different cross‐validation scenarios. ridge regression best linear unbiased (RR‐BLUP), BayesA, BayesB, BayesC, BayesCπ facilitating genomic for additive dominance effects. In...

10.2135/cropsci2012.08.0463 article EN Crop Science 2013-03-01

We present a theoretical proof that the ratio of dominance vs. additive variance decreases with increasing genetic divergence between two populations. While is major component due to specific combining ability (sigma(SCA)(2)), general (sigma(GCA)(2)). Therefore, we conclude interpopulation improvement becomes more efficient divergent than genetically similar heterotic groups, because performance superior hybrids can be predicted on basis effects.

10.1534/genetics.107.074146 article EN Genetics 2007-05-17
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