Muhammad Qasim Shahid

ORCID: 0000-0002-6767-4355
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About
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Research Areas
  • Genetic Mapping and Diversity in Plants and Animals
  • Rice Cultivation and Yield Improvement
  • Chromosomal and Genetic Variations
  • Plant Disease Resistance and Genetics
  • GABA and Rice Research
  • Plant Molecular Biology Research
  • Plant Reproductive Biology
  • Aluminum toxicity and tolerance in plants and animals
  • Genetics and Plant Breeding
  • Soybean genetics and cultivation
  • Horticultural and Viticultural Research
  • Agricultural Systems and Practices
  • Plant Physiology and Cultivation Studies
  • Plant Stress Responses and Tolerance
  • Research in Cotton Cultivation
  • Heavy metals in environment
  • Wheat and Barley Genetics and Pathology
  • Plant tissue culture and regeneration
  • Plant Micronutrient Interactions and Effects
  • Silicon Effects in Agriculture
  • Berry genetics and cultivation research
  • Plant nutrient uptake and metabolism
  • Plant pathogens and resistance mechanisms
  • Plant-Microbe Interactions and Immunity
  • Yeasts and Rust Fungi Studies

South China Agricultural University
2016-2025

Key Laboratory of Guangdong Province
2023

Ministry of Agriculture and Rural Affairs
2021

Bahauddin Zakariya University
2021

Muhammad Nawaz Shareef University of Agriculture
2021

Bolu Abant İzzet Baysal University
2019

Cotton (United States)
2019

University of Agriculture Faisalabad
2017

With the development of molecular marker technology in 1980s, fate plant breeding has changed. Different types markers have been developed and advancement sequencing technologies geared crop improvement. To explore knowledge about markers, several reviews published last three decades; however, all these were meant for researchers with advanced genetics. This review is intended to be a synopsis recent developments their applications devoted early little or no markers. The progress made...

10.1080/13102818.2017.1400401 article EN cc-by Biotechnology & Biotechnological Equipment 2017-11-14

Abstract Lead (Pb) is toxic to the development and growth of rice plants. Nanoparticles (NPs) have been considered one efficient remediation techniques mitigate Pb stress in Therefore, a study was carried out examine underlying mechanism iron (Fe) silicon (Si) nanoparticle-induced toxicity alleviation seedlings. Si–NPs (2.5 mM) Fe-NPs (25 mg L −1 ) were applied alone combination plants grown without (control; no stress) with (100 µM) concentration. Our results revealed that severely affected...

10.1038/s41598-024-55810-2 article EN cc-by Scientific Reports 2024-03-12

Until now, little attention has been paid to the geographic distribution and evaluation of genetic diversity durum wheat from Central Fertile Crescent (modern-day Turkey Syria). Syria are considered as primary centers diversity, thousands locally adapted landraces still present in farmers' small fields. We planned this study evaluate by genotyping based on DArTseq SNP analysis. A total 39,568 20,661 markers were used characterize characteristic 91 land races. Clustering Neighbor joining...

10.1371/journal.pone.0167821 article EN cc-by PLoS ONE 2017-01-18

MicroRNAs (miRNAs) play key roles in plant reproduction. However, knowledge on microRNAome analysis autotetraploid rice is rather limited. Here, high-throughput sequencing technology was employed to analyze miRNAomes during pollen development diploid and polyploid rice. A total of 172 differentially expressed miRNAs (DEM) were detected compared its counterpart, 57 specifically Of the DEM, 115 61 exhibited up- down-regulation, respectively. Gene Ontology targets up-regulated DEM showed that...

10.3390/ijms17040499 article EN International Journal of Molecular Sciences 2016-04-12

Common bean is an important legume crop having high quality protein, micronutrients, vitamins and antioxidants, which makes it a "grain of hope" for poor communities. Hence, good number breeding activities have been performed on the improvement various key traits years. However, recent advancements in molecular markers, sequencing technologies completion common genome sequence opened numerous opportunities fine mapping gene characterization. The availability these tools together with...

10.1080/13102818.2021.1920462 article EN cc-by Biotechnology & Biotechnological Equipment 2021-01-01

An extremely hazardous heavy metal called cadmium (Cd) is frequently released into the soil, causing a considerable reduction in plant productivity and safety. In an effort to reduce toxicity of Cd, silicon dioxide nanoparticles were chosen because their capability react with metallic substances decrease adsorption. This study examines processes that underlie stress caused by Cd how SiO2NPs may be able lessen it through modifying antioxidant defense, oxidative stress, photosynthesis. A 100...

10.3390/plants13121715 article EN cc-by Plants 2024-06-20

Abstract Polyploid rice hybrids have a powerful biological and yield potential that may become new way for breeding; however, low fertility is major hindrance in commercial utilization. Here, we developed neo-tetraploid could overcome the sterility of autotetraploid produce high heterosis. Transcriptome analysis F 1 hybrid by crossing with displayed 807, 663 866 differentially expressed genes uniquely associated specific to (DEGFu-sp) anther, ovary leaf, respectively. Of DEGFu-sp, 1224...

10.1038/srep40139 article EN cc-by Scientific Reports 2017-01-10

Common wild rice (Oryza rufipogon Griff.), the progenitor of Asian cultivated (O. sativa L.), is endangered due to habitat loss. The objectives this research were evaluate genetic diversity species in isolated populations and develop a core collection representative genotypes for ex situ conservation. We collected 885 accessions from eight geographically distinct regions transplanted these protected conservation garden over period almost two decades. evaluated 13 morphological or...

10.1371/journal.pone.0145990 article EN cc-by PLoS ONE 2015-12-31

Turkey presents a great diversity of common bean landraces in farmers' fields. We collected 183 accessions from 19 different Turkish geographic regions and 5 scarlet runner to investigate their genetic population structure using phenotypic information (growth habit, seed weight, flower color, bracteole shape size, pod leaf color), provenance 12,557 silicoDArT markers. A total 24.14% markers were found novel. For the entire (188 accessions), expected heterozygosity was 0.078 overall gene...

10.1371/journal.pone.0205363 article EN cc-by PLoS ONE 2018-10-11

Safflower (Carthamus tinctorius L.) is a multipurpose crop of dry land yielding very high quality edible oil. Present study was aimed to investigate the genetic diversity and population structure 131 safflower accessions originating from 28 different countries using 13 iPBS-retrotransposon markers. A total 295 iPBS bands were observed among which 275 (93.22%) found polymorphic. Mean Polymorphism information content (0.48) parameters including mean effective number alleles (1.33), Shannon’s...

10.1371/journal.pone.0211985 article EN cc-by PLoS ONE 2019-02-26

Plant landraces represent a repository of gene pool, local adaptation their domestic species, and thereby are considered great source genetic variations. Such variation can be helpful to mitigate the current future food challenges. A total 183 common bean accessions including three commercial varieties collected from 19 Turkish provinces were grown record morpho-agronomic variations evaluate best performing under multi-environmental conditions. height, days maturity, pods weight, seed...

10.3390/agronomy10020272 article EN cc-by Agronomy 2020-02-14

Soil salinization is one of the major environmental stresses limiting crop productivity. Crops in agricultural ecosystems have developed various strategies to adapt salt stress. We used rice mutant and CRISPR-edited lines investigate relationships among S quamosa promoter B inding P rotein box (SBP box) family gene ( SST / OsSPL10 ), soil metabolites, rhizosphere bacterial community. found that during stress, there are significant differences community metabolites between plants with those...

10.1128/msystems.00721-20 article EN cc-by mSystems 2020-11-24

Abstract The EPIDERMAL PATTERNING FACTOR (EPF) and EPF-LIKE (EPFL) family of small secreted peptides act to regulate many aspects plant growth development; however, their functions are not widely characterized in rice (Oryza sativa). Here, we used clustered regularly interspaced short palindromic repeats (CRISPR/Cas9) technology individually knockout each 11 EPF/EPFL genes the cultivar Kasalath. Loss function most OsEPF/EPFL generated no obvious phenotype alteration, while disruption OsEPFL2...

10.1093/plphys/kiac278 article EN PLANT PHYSIOLOGY 2022-06-11

Abstract Grain size is important for yield in rice (Oryza sativa L.). Although many genes involved grain have been isolated, few can be used breeding due to their interactions and phenotypic effects. Here, we describe natural variation the granule-type quantitative trait locus GRAIN SIZE AND WEIGHT 3 (GSW3) located on chromosome wild rufipogon Griff.) that encodes a GTPase-regulated protein negatively regulates length, width, 1,000-grain weight. The insertion of 232-bp fragment genomic...

10.1093/plphys/kiad320 article EN cc-by-nc-nd PLANT PHYSIOLOGY 2023-05-30

Partial pollen and embryo sac sterilities are the two main reasons for low fertility in autotetraploid rice. Our previous study revealed that small RNAs changes may associate with However, knowledge on comparative analysis between development of by rice is still unknown. In present study, WE-CLSM (whole-mount eosin B-staining confocal laser scanning microscopy) high-throughput sequencing technology was employed to examine cytological variations analyze during compared its diploid...

10.1186/s12864-017-3526-8 article EN cc-by BMC Genomics 2017-02-06
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