Ashok Zachariah Samuel

ORCID: 0000-0002-6901-6348
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About
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Research Areas
  • Spectroscopy Techniques in Biomedical and Chemical Research
  • Spectroscopy and Chemometric Analyses
  • Advanced Polymer Synthesis and Characterization
  • Genomics and Phylogenetic Studies
  • Dendrimers and Hyperbranched Polymers
  • Advanced Chemical Sensor Technologies
  • Bee Products Chemical Analysis
  • Polymer Surface Interaction Studies
  • Bacterial Infections and Vaccines
  • Extracellular vesicles in disease
  • Digital Holography and Microscopy
  • Metabolomics and Mass Spectrometry Studies
  • Advanced X-ray Imaging Techniques
  • Bacterial biofilms and quorum sensing
  • Polymer crystallization and properties
  • Material Dynamics and Properties
  • Essential Oils and Antimicrobial Activity
  • Identification and Quantification in Food
  • Antimicrobial Peptides and Activities
  • Plant Parasitism and Resistance
  • Advanced Proteomics Techniques and Applications
  • Advanced Fluorescence Microscopy Techniques
  • Marine Sponges and Natural Products
  • Crystallization and Solubility Studies
  • Thermography and Photoacoustic Techniques

University of Illinois Urbana-Champaign
2024

Waseda University
2019-2023

National Yang Ming Chiao Tung University
2016-2018

Indian Institute of Science Bangalore
2010-2015

Gakushuin University
2015

University of Sheffield
2015

Raman spectra are molecular structure-specific and hence employed in applications requiring chemical identification. The advent of efficient handheld smartphone-based instruments is promoting widespread the technique, which often involve less trained end users. Software modules that enable spectral library searches based on pattern matching an essential part such applications. spectrum recorded by users will naturally have varying levels signal to noise (SN), baseline fluctuations, etc.,...

10.1021/acsomega.0c05041 article EN cc-by-nc-nd ACS Omega 2021-01-11

Janus structures have attracted a great deal of interest because their fascinating properties and potential for applications. In this study, we demonstrate that hyperbranched polymers, bearing randomly placed docosyl (C22 alkyl segment) PEG segments on periphery, can readily reconfigure so as to segregate the segments, thereby generating Janus-type termed hybramers. DSC studies clearly reveal an endothermic transition corresponds melting domains, while Langmuir isotherms these polymers form...

10.1021/ma2022277 article EN Macromolecules 2012-02-27

Using Raman and Mid-Infrared (MIR) spectroscopic imaging techniques one can examine the spatial distribution of various molecular constituents in a heterogeneous sample at microscopic scale. MIR spectroscopy provide bond-specific vibrational frequencies to characterize species without external labelling. In addition, these are rapid, non-invasive multiplex advantage. this review we discuss instrumentation, applications latest advancements fields, ranging from materials science medicine...

10.18520/cs/v108/i3/341-356 article EN Current Science 2015-01-01

Multifocus Raman imaging is one of the fast-imaging alternatives to conventional single point mapping technique.

10.1039/c4an01983k article EN The Analyst 2015-01-01

Abstract Raman imaging has become an attractive technology in molecular biology because of its ability to detect multiple components simultaneously without labeling. Two major limitations accurately accounting for spectral features, viz ., background removal and unmixing, have been overcome by employing a modified effective routine multivariate curve resolution (MCR). With our improved strategy, we spectrally isolated seven structurally specific biomolecules any post-acquisition treatments....

10.1038/s42003-020-1100-4 article EN cc-by Communications Biology 2020-07-10

Raman microspectroscopy is a minimally invasive technique that can identify molecules without labeling. In this study, we demonstrate the detection of penicillin G inside Penicillium chrysogenum KF425 fungal cells. spectra acquired from cells had highly overlapped spectroscopic signatures and hence were analyzed with multivariate curve resolution by alternating least-squares (MCR-ALS) to extract individual molecular constituents. addition detecting spatial distribution multiple constituents...

10.1021/acs.jnatprod.0c00214 article EN Journal of Natural Products 2020-10-19

We have recently demonstrated a methodology to estimate the percent crystallinity (PC) of polymers directly with Raman spectroscopy and multivariate curve resolution (MCR) by alternating least-squares (ALS). In MCR-ALS methodology, spectrum semicrystalline polymer is separated into two constituent components (crystalline molten/amorphous) their corresponding concentrations. The necessitates that at any temperature be linear combination MCR spectral (one molten one crystalline). This true in...

10.1021/acs.analchem.6b04750 article EN Analytical Chemistry 2017-02-07

Condensation of water droplets during rapid evaporation a polymer solution, under humid conditions, has been known to generate uniformly porous films. Similar films are also formed when solution the in THF containing small amounts water, is allowed evaporate rapidly air flow; this suggests that may be final stages film formation. In presence added surfactants, interface could become lined with surfactants and consequently internal walls pores generated, upon removal decorated hydrophilic...

10.1021/am200735t article EN ACS Applied Materials & Interfaces 2011-08-04

We demonstrate a methodology to estimate the percent crystallinity of polymers directly with Raman spectroscopy and multivariate curve resolution (MCR) by alternating least-squares (ALS). In this methodology, spectrum semicrystalline polymer is separated into two constituent components (crystalline molten) their corresponding concentrations. The can be estimated as change in area intensity molten spectral-component when cools from temperature above melting point room temperature. number...

10.1021/acs.analchem.5b04075 article EN Analytical Chemistry 2016-04-07

The mechanism of production extracellular vesicles (EVs) and their molecular contents are great interest due to diverse roles in biological systems far from being completely understood. Even though cellular cargo releases mediated by EVs have been demonstrated several cases, role secondary metabolite release remains elusive. In this study, aspect is investigated detail using Raman microspectroscopic imaging. Considerable evidence provided suggest that the antibiotic penicillin filamentous...

10.1002/adbi.202101322 article EN cc-by-nc-nd Advanced Biology 2022-03-11

Abstract Spatial transcriptome analysis of formalin-fixed paraffin-embedded (FFPE) tissues using RNA-sequencing (RNA-seq) provides interactive information on morphology and gene expression, which is useful for clinical applications. However, despite the advantages long-term storage at room temperature, FFPE may be severely damaged by methylene crosslinking provide less than fresh-frozen tissues. In this study, we proposed a sensitive micro-tissue RNA-seq method that combines punching tissue...

10.1038/s41598-022-23651-6 article EN cc-by Scientific Reports 2022-11-14

Methodologies for direct intracellular imaging of RNA and DNA are necessary the advancement bioimaging. Here we show label-free in single cells by isolating their accurate Raman spectra. images from interphase intact nucleus, while those mitotic reveal condensed chromosome. The chromosome enough to assign stage cell division (e.g., metaphase). spectral features indicate B-DNA double helical conformational form all lines investigated here. RNAs, on other hand, liquid-liquid phase separated...

10.1038/s42003-022-04342-4 article EN cc-by Communications Biology 2022-12-17

Single-molecule force spectroscopy has proven to be an efficient tool for the quantitative characterization of flexible foldamers on single-molecule level in this study. The extent folding been estimated quantitatively first time best our knowledge, which is crucial a better understanding "folding-process" level. Therefore, study may provide guidance regulate realizing rational control over functions bulk materials.

10.1021/la403709u article EN Langmuir 2013-10-29

A peripherally clickable hyperbranched polyester carrying numerous propargyl terminal groups was prepared by a simple melt transesterification polycondensation of suitably designed AB(2) monomer; this hyperscaffold then transformed into variety different derivatives using the Cu-catalyzed azide-yne click reaction. Functionalization periphery with equimolar quantities mutually immiscible segments, such as hydrocarbon, fluorocarbon, and PEG, yielded frustrated molecular systems that readapt...

10.1021/la304146r article EN Langmuir 2012-12-31

Label-free quantitative phase imaging can potentially measure cellular dynamics with minimal perturbation, motivating efforts to develop faster and more sensitive instrumentation. We characterize fast, single-shot gradient microscopy (ss-QPGM) that simultaneously acquires multiple polarization components required reconstruct images. integrate a computationally efficient least squares algorithm provide real-time, video-rate (up

10.1117/1.jbo.29.s2.s22712 article EN cc-by Journal of Biomedical Optics 2024-07-16

Raman imaging has transcended in recent times from being an analytical tool to a molecular profiling technique. Biomedical applications of this technique often rely on singular-value decomposition (SVD), principal component analysis (PCA), etc. for data analysis. These methods, however, obliterate the information contained original leading speculative interpretations based relative intensities. In present study, SVD images Penicillium chrysogenum resulted 11 spectral components and...

10.1021/acs.analchem.1c02942 article EN Analytical Chemistry 2021-08-27

10.1016/j.saa.2022.121870 article EN publisher-specific-oa Spectrochimica Acta Part A Molecular and Biomolecular Spectroscopy 2022-09-12

Rickettsiales-like organisms are important for the survival and functioning of corals, prompting an investigation their complete genomes. Earlier reports genomes these remain incomplete. Here, we report a novel draft genome Rickettsiales bacterial strain SESOKO1, found in Acropora tenuis coral, using single-cell technology.

10.1128/mra.00848-20 article EN Microbiology Resource Announcements 2020-11-24
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